PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g048440.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 103aa MW: 10567.7 Da PI: 4.3022

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g048440.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.7	3.4e-09	70	102	1	33
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWee 33 rW++qe+laL+++r++m+ ++r+++ k+plWee Csa07g048440.1 70 RWPRQETLALLKLRSDMGIAFRDASVKGPLWEE 102 8******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MMQLGGGTPS TTTTTTAAAA STATPPPPPP QPQPQPQSND SAATEAAAAA AVGAFEVSEE 60 MNDRGFGGNR WPRQETLALL KLRSDMGIAF RDASVKGPLW EE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g048440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079283	7e-66	AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence.
GenBank	CP002684	7e-66	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010416611.1	1e-63	PREDICTED: trihelix transcription factor GT-2-like isoform X1
Refseq	XP_019083408.1	1e-63	PREDICTED: trihelix transcription factor GT-2-like isoform X2
TrEMBL	M4CHM0	2e-28	M4CHM0_BRARP; Uncharacterized protein
STRING	XP_010416611.1	5e-63	(Camelina sativa)
STRING	XP_010416612.1	1e-66	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM32324	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	7e-28	Trihelix family protein