PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g052940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 230aa    MW: 26255.6 Da    PI: 7.1165
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g052940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.11.2e-10129174348
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                     e+++ +r+++NRe+A+rsR RK+  ie+L++++  L  eN++L ++
  Csa07g052940.1 129 EDRKRKRMESNRESAKRSRMRKQRHIENLKDEANRLGLENRELGNR 174
                     78999***********************************999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-13127191IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.6E-10128175No hitNo description
PROSITE profilePS502179.99129175IPR004827Basic-leucine zipper domain
PfamPF001703.9E-9129175IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-10131178No hitNo description
CDDcd147025.18E-16132179No hitNo description
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMSTLPAFSF TEPGLVNQIS DFQTGFTPWE LDCCADLFLS TIHQEPAVPS PCTGESETGS  60
VKINTGFNGF DESCIGSIKT NSGSDDSDIF HGVPSPQSDE LNSDNTRTRI NATDHNRMKL  120
NRPVLQVSED RKRKRMESNR ESAKRSRMRK QRHIENLKDE ANRLGLENRE LGNRLRIVLY  180
NIGLISTDND RLMSEQEILR RRFLEMRQIL ILRQLQQNPS LIINHHQMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g052940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417044.11e-169PREDICTED: basic leucine zipper 43-like
TrEMBLD7LE491e-145D7LE49_ARALL; BZIP transcription factor family protein
STRINGXP_010417044.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.21e-135basic leucine-zipper 6