PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g054920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 496aa    MW: 55391.2 Da    PI: 5.396
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g054920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.5e-07140160526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ff++   C++G++C+ +Hg
  Csa07g054920.1 140 MCKFFMQ-QRCRFGSSCRSSHG 160
                     6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.568135162IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-4135161IPR000571Zinc finger, CCCH-type
SMARTSM004431.0E-14295341IPR000467G-patch domain
PROSITE profilePS5017413.587297343IPR000467G-patch domain
PfamPF015852.1E-14297340IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MASEEEKALE DLLDVQLKEQ KDSLSAIDEA LASDPFNPEL LSVHEELLQA IKETEEGLFQ  60
LKRARLLQEA DIALSVLNHD AGVEAVHLKE LEPEKKDLDG SQCRFRHTDG RWYNGRIIGF  120
EGSDTAKISF LTPTSESMTM CKFFMQQRCR FGSSCRSSHG LDVPLSSLKN YAQTEWKESM  180
VGSKIWAVSG SKYDIWRKAE LESWDDELQV GGIVFRDDGS SAKLGSDAMA LSEYAQMTDD  240
DGEEEENEEG SASDSDESIS SDYEEESPQG IGFLESTNQP RGVQTDTVLF AKWENHTRGI  300
ASKMMASMGY REGMGLGASG QGILNPVLVK VLPAKRSLDY ALEHVKNGEG KSDKQKKKRS  360
RGGKRKREKK FAEAARAAKQ KEESKPDLFS FINEQIFPRS HEKVSSIESV KKKQNNGPVD  420
RKALVAYQDE IKDLKVELMK LEQMVNRNKK DQVVSDAATK RLNQVRKALA STLASQAAAS  480
NAVEIKEKEK KWLKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352358DKQKKKR
2354369QKKKRSRGGKRKREKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g054920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291890.0AK229189.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-48-E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417242.10.0PREDICTED: zinc finger CCCH domain-containing protein 22
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A087GRV50.0A0A087GRV5_ARAAL; Uncharacterized protein
STRINGXP_010417242.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein