PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g056840.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 220aa MW: 24256 Da PI: 4.4296

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g056840.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.4	2.7e-16	27	75	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G r ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Csa07g056840.1 27 YRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 75 89999888.********843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.2E-30	26	84	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-20	26	84	IPR016177	DNA-binding domain
Pfam	PF00847	2.3E-10	26	75	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.037	26	83	IPR001471	AP2/ERF domain
SMART	SM00380	3.2E-35	26	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-10	27	38	IPR001471	AP2/ERF domain
CDD	cd00018	1.82E-32	27	85	No hit	No description
PRINTS	PR00367	3.3E-10	49	65	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSESHGSDTE WSSTKKGKEK SKETVVYRGA RMRSWGKWVS EIREPRKKSR IWLGTFPTAE 60 MAARAHDVAA LSIKGTSAIL NFPELAEFLP RPISLSPQDI QAAAAEAALM DFKTVPFNLE 120 DKTTSSQTRC ETENIEKGPS SSSSSSSSSS SMLSEELGEI VELPSLDNNV KNDFGLFDSL 180 EGLVSMPPWL DATKDDFTYG DDSVLLDPLL QESYLWNYE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-18	17	84	5	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g056840.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By drought. {ECO:0000269\|PubMed:16307362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005395	1e-143	AC005395.3 Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete sequence.
GenBank	AY974198	1e-143	AY974198.1 Arabidopsis thaliana clone At2g25820 AP2/EREBP transcription factor mRNA, complete cds.
GenBank	CP002685	1e-143	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010417360.1	1e-159	PREDICTED: ethylene-responsive transcription factor ERF042-like
Swissprot	Q52QU1	1e-108	ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBL	R0FYP1	1e-124	R0FYP1_9BRAS; Uncharacterized protein
STRING	XP_010417360.1	1e-159	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25820.1	1e-104	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]