PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g060500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 372aa    MW: 41588.1 Da    PI: 5.5492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g060500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
   Csa07g060500.1 22 KGPWTQAEDNLLIACVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                     79*******************************************996 PP
2Myb_DNA-binding47.15.6e-1575118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+ E+++ ++++++lG++ W++ a +++ gRt++++k++w++
   Csa07g060500.1  75 KGAFTEKEEQRVIELHALLGNK-WARMAGELP-GRTDNEIKNFWNT 118
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6811769IPR017930Myb domain
SMARTSM007173.3E-152171IPR001005SANT/Myb domain
SuperFamilySSF466891.68E-2821116IPR009057Homeodomain-like
PfamPF002493.5E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-232376IPR009057Homeodomain-like
CDDcd001673.19E-122469No hitNo description
PROSITE profilePS5129424.54970124IPR017930Myb domain
SMARTSM007174.7E-1474122IPR001005SANT/Myb domain
PfamPF002498.3E-1475118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2477122IPR009057Homeodomain-like
CDDcd001674.72E-1077120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGKVRNDSGS DDDIATEKTF TKGPWTQAED NLLIACVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGAFTE KEEQRVIELH ALLGNKWARM AGELPGRTDN EIKNFWNTRL  120
KRLQRLGLPV YPDDVREQAM NAATQSGFNN GHSLDGHHSQ ASLESDSVEI PELDFQHLPL  180
NQCSSYYKSM LRSVPTSGVF VRQNPCFFQP NVYNLMSSSP SYMSTGKRSR EPETAFPCTG  240
GSYAMNEQSP PLWNYPFVDN ISEQLPGSHL LDDNATYYTP PPEPLIHELP SFQYFNPHEE  300
PGGAQQSNSM QVHESDNTLV QSPLSPSSLY DGLLESIVYG SARKKQVTDT DLESTLLLQS  360
SSLLGHTDEP TT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30201225106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g060500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083584.10.0PREDICTED: transcription factor MYB104-like
SwissprotQ9SM276e-98MY104_ARATH; Transcription factor MYB104
TrEMBLD7LFF10.0D7LFF1_ARALL; Predicted protein
STRINGXP_010473083.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.10.0myb domain protein 81
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]