PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g060670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 844aa MW: 95415.9 Da PI: 6.6465

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g060670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.1	2.2e-11	49	120	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eY++++GF+ + +++g++ r+fvCs + ++++ + +C+a+++++++ ++kw+v+k+++eH+H la Csa07g060670.1 49 SFYDEYSRQLGFTSKSLP----RTDGSVSVREFVCSSKRSKRRLAE--------------SCDAMVRIEMKGHDKWVVAKFVKEHTHGLA 120 5*********876654....55899****98877666554..............5************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-6	50	120	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.2E-24	243	334	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.398	521	557	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-9	526	555	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-8	532	559	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence Send to blast
MDIHLVEEMG DDGDAEPNNM ENSLGVQDEI GIAEPCVGME FSSEKEAKSF YDEYSRQLGF 60 TSKSLPRTDG SVSVREFVCS SKRSKRRLAE SCDAMVRIEM KGHDKWVVAK FVKEHTHGLA 120 SPNTLHCLRP RRHFANSEKS SFQQGVNNVP SGMMYVSMDG NRVPLESSNS RSASSKDSKN 180 YGTNTKRTIG RDAHNLLEYF KRMQAENPGF FYAVQLDEDN QMTNVFWADS RSRFAYTHFG 240 DAVTLDTRYR CNQFRVPFAP FTGVNHHGQT IIFGCALILD ESDTSFIWLF KTFLTAMRDQ 300 PPVSLVTDQD RAIQIAVAQV FPGARHCINK WDVLREGQEK LAHVCLAYPS FQVELYNCIN 360 FTETIEEFES SWSSIIEKYD LGRHEWLTSL YNARAQWVPV YFRDSFFAAV FPSQGYSGSF 420 FDGYVNQQTT LPMFFRLYER AMENWFEMET EADLDTVNTP PVLKTPSPME NQAANLFTRK 480 IFGKFQEELV ETFAHTANRI EDDGTTSTFR VAKFEDDNKA YIVTFCYPEM RANCSCQMFE 540 HCGILCRHVL TVFTVTNIPT LPPHYILRRW TRNAKSMGEL DEHVSENGHD SLIHRYNHLC 600 REAIKYAEGG AVTAEAYNIA LGALREGGKK VSVVRKNIGR AIPPSAHGSG GKTSLSAADT 660 TPLLWPRQDE MIRRFNLNDG GARAQSVADL NLPRMAPVSL HQDDGAPENM VALPCLKSMT 720 WVMESKNTMP GGRVAVINLK LHDYRKFPSA DMEVKFQLSS VTLEPMLSSM AYISKQLSSP 780 ANRVAVINLK LQDTETTTGE SEVKFQVSRD TLGAMLRSMA YIREQLSIVG ELQTEPQAKK 840 QRK*

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence Send to blast

MDIHLVEEMG DDGDAEPNNM ENSLGVQDEI GIAEPCVGME FSSEKEAKSF YDEYSRQLGF  60
TSKSLPRTDG SVSVREFVCS SKRSKRRLAE SCDAMVRIEM KGHDKWVVAK FVKEHTHGLA  120
SPNTLHCLRP RRHFANSEKS SFQQGVNNVP SGMMYVSMDG NRVPLESSNS RSASSKDSKN  180
YGTNTKRTIG RDAHNLLEYF KRMQAENPGF FYAVQLDEDN QMTNVFWADS RSRFAYTHFG  240
DAVTLDTRYR CNQFRVPFAP FTGVNHHGQT IIFGCALILD ESDTSFIWLF KTFLTAMRDQ  300
PPVSLVTDQD RAIQIAVAQV FPGARHCINK WDVLREGQEK LAHVCLAYPS FQVELYNCIN  360
FTETIEEFES SWSSIIEKYD LGRHEWLTSL YNARAQWVPV YFRDSFFAAV FPSQGYSGSF  420
FDGYVNQQTT LPMFFRLYER AMENWFEMET EADLDTVNTP PVLKTPSPME NQAANLFTRK  480
IFGKFQEELV ETFAHTANRI EDDGTTSTFR VAKFEDDNKA YIVTFCYPEM RANCSCQMFE  540
HCGILCRHVL TVFTVTNIPT LPPHYILRRW TRNAKSMGEL DEHVSENGHD SLIHRYNHLC  600
REAIKYAEGG AVTAEAYNIA LGALREGGKK VSVVRKNIGR AIPPSAHGSG GKTSLSAADT  660
TPLLWPRQDE MIRRFNLNDG GARAQSVADL NLPRMAPVSL HQDDGAPENM VALPCLKSMT  720
WVMESKNTMP GGRVAVINLK LHDYRKFPSA DMEVKFQLSS VTLEPMLSSM AYISKQLSSP  780
ANRVAVINLK LQDTETTTGE SEVKFQVSRD TLGAMLRSMA YIREQLSIVG ELQTEPQAKK  840
QRK*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g060670.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317350	0.0	AK317350.1 Arabidopsis thaliana AT2G27110 mRNA, complete cds, clone: RAFL24-16-J02.
GenBank	AY057491	0.0	AY057491.1 Arabidopsis thaliana At2g27110/T20P8.16 mRNA, complete cds.
GenBank	BT002690	0.0	BT002690.1 Arabidopsis thaliana At2g27110/T20P8.16 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010417857.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	R0HMV5	0.0	R0HMV5_9BRAS; Uncharacterized protein
STRING	XP_010417857.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]