PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g064290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 261aa    MW: 29405.6 Da    PI: 8.7021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g064290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-1474126155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++++h  +Er+RR+++ s f  Lr+llP       ++K s ++   +Av+YIk+Lq
  Csa07g064290.1  74 KKMKHRDIERQRRQEVSSLFKSLRSLLPFqY---IQGKRSTSDHIFQAVKYIKDLQ 126
                     6899*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.74E-1670146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.29E-1471130No hitNo description
PROSITE profilePS5088814.58373125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1274142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-1274126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-579131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDFVPSMFML DSTYEDGLLF SDSFLLSSFV SNQNHDVCDQ IANKIGGSKK KRSLCDTYGV  60
SEADKNDDDD RESKKMKHRD IERQRRQEVS SLFKSLRSLL PFQYIQGKRS TSDHIFQAVK  120
YIKDLQNKNK ELNEKRNRIK KSIPGTNTTV PSTEECTSSL SSSTTSTFSL GCSCVGDKHF  180
TVMVTPCLVG VEIIISCCLG RNKSCLSSVL QILAQEQRLG IVSCLSTRLQ QRFMHTIVSQ  240
VEDSKQINTL KLRDKIVNMM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g064290.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935160.0AB493516.1 Arabidopsis thaliana At1g62975 mRNA for hypothetical protein, partial cds, clone: RAAt1g62975.
GenBankAK2280360.0AK228036.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-54-L04.
GenBankBT0064080.0BT006408.1 Arabidopsis thaliana At1g62975 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418297.10.0PREDICTED: transcription factor bHLH125
SwissprotQ9LQ081e-135BH125_ARATH; Transcription factor bHLH125
TrEMBLR0GI841e-138R0GI84_9BRAS; Uncharacterized protein
STRINGXP_010418297.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-109bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]