PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g065400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 365aa    MW: 41507.2 Da    PI: 5.7425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g065400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+ I+++ g+ R++k+c++rw +yl
   Csa07g065400.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEIPEKAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding254.5e-0867105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE++l++ ++   G+        +++ gRt++++k++w+++
   Csa07g065400.1  67 RGRFSSEEEKLIISLHGVVGNS-------HLP-GRTDNEIKNYWNSW 105
                      89******************88.......***.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.153965IPR017930Myb domain
SuperFamilySSF466896.74E-2411102IPR009057Homeodomain-like
SMARTSM007175.9E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001676.28E-121761No hitNo description
Gene3DG3DSA:1.10.10.604.6E-1565110IPR009057Homeodomain-like
PROSITE profilePS5129412.03766110IPR017930Myb domain
SMARTSM007174.1E-566108IPR001005SANT/Myb domain
PfamPF002493.8E-667105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEI PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF SSEEEKLIIS LHGVVGNSHL PGRTDNEIKN YWNSWIKKKI RKPHHHYNRH  120
QPSVTTVTLN LEDTPMATTV TSSTNPSTVD NLQFDGFTES PNQSNFANDQ ETNIKIQEAL  180
LCHKPPLFMV DTTLPILEGM FSQNIITNKN NNHDTQRGGR GNLCEQAFLT TNTEEWDMNL  240
PQQEQREPFQ VPTMASHLFN NSTCSNIETT ISYNLPALIE ENMDNIVPME NSNAQDGYMS  300
STFECLKRQD LSYDQWVDSQ QCSNIFFWDN LNINVEGSSS IVGNQDPSMT LGSSALSSSF  360
PSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-20141107108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g065400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0108520.0AC010852.7 Arabidopsis thaliana chromosome 1 BAC T12P18 genomic sequence, complete sequence.
GenBankAF2141160.0AF214116.2 Arabidopsis thaliana putative transcription factor (MYB103) mRNA, complete cds.
GenBankAK2266510.0AK226651.1 Arabidopsis thaliana mRNA for putative MYB family transcription factor, complete cds, clone: RAFL07-41-F24.
GenBankAY5195640.0AY519564.1 Arabidopsis thaliana MYB transcription factor (At1g63910) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418430.10.0PREDICTED: transcription factor MYB86-like
SwissprotQ8VZQ21e-58MYB61_ARATH; Transcription factor MYB61
TrEMBLD7KSX90.0D7KSX9_ARALL; ATMYB103
STRINGXP_010418430.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87602539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.10.0myb domain protein 103
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]