PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08520s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 143aa    MW: 15490.3 Da    PI: 6.5557
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08520s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.32.6e-1688141457
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                      +r+rr++kNRe+A rsR+RK+a++ eLe+ +++Le+eN+ L ke+e  +ke +
  Csa08520s010.1  88 AQRQRRMIKNRESAARSRERKQAYQVELETLAAKLEEENELLSKEIEDKRKERY 141
                     79********************************************99888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-1384139No hitNo description
SMARTSM003382.4E-685143IPR004827Basic-leucine zipper domain
PfamPF001704.0E-1587142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.19787139IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.88E-1089140No hitNo description
CDDcd147071.16E-1789134No hitNo description
PROSITE patternPS00036092107IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
AAGEDEGGAA VTAEDLDVKI PPPTNYGFDH SAPPHNPFQM IDKVEGSIVA FGNGLDVFGG  60
GGGGVGAGGG ARGKRARVMV EPLDKVAAQR QRRMIKNRES AARSRERKQA YQVELETLAA  120
KLEEENELLS KEIEDKRKER YQK
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08520s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864571e-104AY086457.1 Arabidopsis thaliana clone 25211 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010497677.27e-98PREDICTED: G-box-binding factor 4-like, partial
SwissprotP427772e-38GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A178UQ196e-76A0A178UQ19_ARATH; Uncharacterized protein
TrEMBLQ8LCQ76e-76Q8LCQ7_ARATH; Uncharacterized protein
STRINGXP_010494407.13e-82(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.19e-46bZIP family protein