PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08842s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 141aa    MW: 15698.6 Da    PI: 6.137
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08842s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-083879240
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40
                     ++W++eE + l ++ +++++g   +W+ I++++g+gR+ +++
   Csa08842s010.1 38 KPWSKEEIDMLRKGTTKFPKGtsqRWEVISEYIGTGRSVEEI 79
                     69************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-53379IPR009057Homeodomain-like
SMARTSM007176.3E-53689IPR001005SANT/Myb domain
PfamPF002494.5E-63879IPR001005SANT/Myb domain
SuperFamilySSF466895.93E-83881IPR009057Homeodomain-like
CDDcd001674.27E-53979No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
EEEVVVAVKQ NGHIEAKVET NGHVEAKVDT ATHQKKEKPW SKEEIDMLRK GTTKFPKGTS  60
QRWEVISEYI GTGRSVEEIL KATKTVLLQK PDSAKAFDSF LENRKPAASI ASPLSTREEL  120
GEPIIATKPH EEDNSTKTET T
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08842s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293951e-154AK229395.1 Arabidopsis thaliana mRNA for cell division related protein-like, partial cds, clone: RAFL16-64-C21.
GenBankAP0020301e-154AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026881e-154CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423388.12e-92PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLQ0WNP28e-83Q0WNP2_ARATH; Cell division related protein-like (Fragment)
TrEMBLR0FE252e-80R0FE25_9BRAS; Uncharacterized protein
STRINGXP_010423388.19e-92(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.26e-84DnaJ domain ;Myb-like DNA-binding domain