PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g001640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 384aa    MW: 43621.8 Da    PI: 9.5685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g001640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-134798148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg...kgRtlkqcksrwqkyl 48
                     +g WT eEdell +av++  g+ +Wk+I + ++    +R++ qc++rw+k+l
   Csa08g001640.1 47 KGGWTSEEDELLTNAVQMNKGHtSWKKIVEGVPglkDKRSEVQCQHRWLKVL 98
                     688*****************999*************99***********986 PP
2Myb_DNA-binding26.51.5e-081141392248
                      T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++W++I++ ++ gR +kqc++rw+++l
   Csa08g001640.1 114 PQWSKISKQLP-GRIGKQCRERWHNHL 139
                      38*********.*************97 PP
3Myb_DNA-binding43.76.4e-14146187245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +W  eE+++lv+  +++G++ W+ Ia+ ++ gRt++++k++w+
   Csa08g001640.1 146 TAWIREEELILVQSQREHGNK-WAEIAKLLP-GRTENNIKNHWN 187
                      67999****************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.88442102IPR017930Myb domain
SuperFamilySSF466891.28E-1245112IPR009057Homeodomain-like
SMARTSM007171.6E-1046100IPR001005SANT/Myb domain
PfamPF002492.6E-124798IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-1549113IPR009057Homeodomain-like
CDDcd001673.59E-85098No hitNo description
SMARTSM007170.29103141IPR001005SANT/Myb domain
PROSITE profilePS500907.549109139IPR017877Myb-like domain
CDDcd001673.45E-5112139No hitNo description
PfamPF002496.7E-7113139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-16114147IPR009057Homeodomain-like
SuperFamilySSF466891.12E-26119197IPR009057Homeodomain-like
PROSITE profilePS5129422.25140194IPR017930Myb domain
SMARTSM007172.9E-12144192IPR001005SANT/Myb domain
PfamPF002493.8E-12146187IPR001005SANT/Myb domain
CDDcd001674.73E-9147187No hitNo description
Gene3DG3DSA:1.10.10.601.8E-18148194IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MTTESNDLNR SESESDISAA TQVTPTIAVD FSLGCKRVSG PTRRSTKGGW TSEEDELLTN  60
AVQMNKGHTS WKKIVEGVPG LKDKRSEVQC QHRWLKVLDP NLCKGHWTKY NDRPQWSKIS  120
KQLPGRIGKQ CRERWHNHLN PTIKKTAWIR EEELILVQSQ REHGNKWAEI AKLLPGRTEN  180
NIKNHWNCSV KKRLEQFPSN LSPGVLYGSR PSGFEYNFFN HKTLQIEEAA VKSPLRDSLE  240
LTLGPTSWRS TPSSTSSLRG DESISSSVES DWSSLNEVSE STQETPQSSK DNECIQEVKE  300
IKKRLRMAAS TFNTPSIISK RSSPALKWHR QNELNTPFHI DGGSHMSSEE EHSTSPFSKY  360
RLAKRNTCSG SKPLERRLDF DFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-49501949159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-49501949159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g001640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1516471e-107AF151647.1 Arabidopsis thaliana PC-MYB2 (PC-MYB2) mRNA, complete cds.
GenBankAF2180541e-107AF218054.2 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083752.10.0PREDICTED: myb-related protein 306-like isoform X1
SwissprotQ9SPN31e-160MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLR0FHY70.0R0FHY7_9BRAS; Uncharacterized protein
STRINGXP_010419600.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-152myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]