PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g002660.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 956aa MW: 106720 Da PI: 5.0948

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g002660.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.3e-18	34	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEde l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l Csa08g002660.1 34 RGQWTAEEDEVLRKAVHSFKGKNWKKIAEYFK-DRTDVQCLHRWQKVL 80 89***************************9.**********986 PP
2	Myb_DNA-binding	64.3	2.4e-20	86	132	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde +v++++++G++ W+tIar+++ gR +kqc++rw+++l Csa08g002660.1 86 KGPWTKEEDEMIVQLIEKYGPKKWSTIARYLP-GRIGKQCRERWHNHL 132 79****************************.***********97 PP
3	Myb_DNA-binding	42.6	1.4e-13	138	180	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gR+++ +k++w+ Csa08g002660.1 138 KEAWTQEEELVLIRAHQIYGNK-WAELTKFLP-GRSDNGIKNHWH 180 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.899	29	80	IPR017930	Myb domain
SuperFamily	SSF46689	2.8E-15	31	86	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-15	33	82	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	34	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-22	35	88	IPR009057	Homeodomain-like
CDD	cd00167	1.67E-13	37	80	No hit	No description
PROSITE profile	PS51294	33.057	81	136	IPR017930	Myb domain
SuperFamily	SSF46689	1.39E-31	83	179	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-19	85	134	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-18	86	132	IPR001005	SANT/Myb domain
CDD	cd00167	2.62E-17	88	132	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-27	89	136	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-19	137	187	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.044	137	187	IPR017930	Myb domain
SMART	SM00717	4.4E-12	137	185	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-11	138	180	IPR001005	SANT/Myb domain
CDD	cd00167	2.12E-9	140	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0032875	Biological Process	regulation of DNA endoreduplication
GO:0003677	Molecular Function	DNA binding
GO:0003713	Molecular Function	transcription coactivator activity

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MESESTTTTI STPQDGIPKS RHGRTSGPAR RSTRGQWTAE EDEVLRKAVH SFKGKNWKKI 60 AEYFKDRTDV QCLHRWQKVL NPELVKGPWT KEEDEMIVQL IEKYGPKKWS TIARYLPGRI 120 GKQCRERWHN HLNPAINKEA WTQEEELVLI RAHQIYGNKW AELTKFLPGR SDNGIKNHWH 180 SSVKKKLDSY MSSGLLDQYQ AMPLAPYERS STLQSAFMQS NIDGNGEIDS RQNSSMVGCS 240 LSAGDFSNGA INMDHHFYPC RNSQETEQAV YHSDQYFYPE LEDISVSISE VSYDMEDCSQ 300 FPDHNNVSTA PSQDYQFDFQ ELSDISLEMR QANMSELPMP YTKESKESTV EPTNSTLSID 360 VATYTNSANV LTPETECCRV LFPDQESEGH SVSRSLTQEP NEVNQSDSRD PILSASASDS 420 QISEATKSPM QSSSSRLNAT AASGKETLRP APLIITPDKY AKKSSGLICH PFEAEPKCTT 480 NGNGRFICID DPSSFTCVDG GTNNSSEEDQ SYHVNDSKKL VAVSDFASLA EDRPHSPPKH 540 DPNTTSEQHH EDMGASSSLG FPSLDLPVFS CDLLQSKNDP LHDYSPLGIR KLLMSTMTCI 600 SPIRLWGSPT GKKTLVGAKS ILRKRTRDLL TPLSEKRSDK KLETDIAASL AKDFSRLDVM 660 FDESENRESI FGNNTDVILG DRINSGEGEE NWRSNPSSLF SHKMPEETVH IRKSLEKAEQ 720 TCMEANVREN DGSGANVENA ESFSGVLSEL NNCKPVLSSP PGQSVTKAEK AQVLTPRNQF 780 QKTFMANKEQ HSSSSLCLVI NSPSLARNTE GHLVDNETSN ENFSIFCGTP FRRGLESPSA 840 WKSPFYVNSL LPSPRFDTEI TIEDMGYIFS PGERSYDSIG VMTQRNEHAR AFAAFADAME 900 VSISPTNDDA EQKKELNKEN NDPLLAERRV LDFNDCESPV KATEEVSSYL LKGSR*

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MESESTTTTI STPQDGIPKS RHGRTSGPAR RSTRGQWTAE EDEVLRKAVH SFKGKNWKKI  60
AEYFKDRTDV QCLHRWQKVL NPELVKGPWT KEEDEMIVQL IEKYGPKKWS TIARYLPGRI  120
GKQCRERWHN HLNPAINKEA WTQEEELVLI RAHQIYGNKW AELTKFLPGR SDNGIKNHWH  180
SSVKKKLDSY MSSGLLDQYQ AMPLAPYERS STLQSAFMQS NIDGNGEIDS RQNSSMVGCS  240
LSAGDFSNGA INMDHHFYPC RNSQETEQAV YHSDQYFYPE LEDISVSISE VSYDMEDCSQ  300
FPDHNNVSTA PSQDYQFDFQ ELSDISLEMR QANMSELPMP YTKESKESTV EPTNSTLSID  360
VATYTNSANV LTPETECCRV LFPDQESEGH SVSRSLTQEP NEVNQSDSRD PILSASASDS  420
QISEATKSPM QSSSSRLNAT AASGKETLRP APLIITPDKY AKKSSGLICH PFEAEPKCTT  480
NGNGRFICID DPSSFTCVDG GTNNSSEEDQ SYHVNDSKKL VAVSDFASLA EDRPHSPPKH  540
DPNTTSEQHH EDMGASSSLG FPSLDLPVFS CDLLQSKNDP LHDYSPLGIR KLLMSTMTCI  600
SPIRLWGSPT GKKTLVGAKS ILRKRTRDLL TPLSEKRSDK KLETDIAASL AKDFSRLDVM  660
FDESENRESI FGNNTDVILG DRINSGEGEE NWRSNPSSLF SHKMPEETVH IRKSLEKAEQ  720
TCMEANVREN DGSGANVENA ESFSGVLSEL NNCKPVLSSP PGQSVTKAEK AQVLTPRNQF  780
QKTFMANKEQ HSSSSLCLVI NSPSLARNTE GHLVDNETSN ENFSIFCGTP FRRGLESPSA  840
WKSPFYVNSL LPSPRFDTEI TIEDMGYIFS PGERSYDSIG VMTQRNEHAR AFAAFADAME  900
VSISPTNDDA EQKKELNKEN NDPLLAERRV LDFNDCESPV KATEEVSSYL LKGSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	3e-68	34	187	6	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-68	34	187	6	159	MYB PROTO-ONCOGENE PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269\|PubMed:17287251, ECO:0000269\|PubMed:21862669, ECO:0000269\|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269\|PubMed:20018666}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00505	DAP	Transfer from AT5G11510	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g002660.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:17287251}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF371975	0.0	AF371975.2 Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4 (MYB3R4) mRNA, complete cds.
GenBank	AY519650	0.0	AY519650.1 Arabidopsis thaliana MYB transcription factor (At5g11510) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019083774.1	0.0	PREDICTED: myb-related protein 3R-1-like
Swissprot	Q94FL9	0.0	MB3R4_ARATH; Transcription factor MYB3R-4
TrEMBL	R0H5A0	0.0	R0H5A0_9BRAS; Uncharacterized protein
STRING	XP_010419723.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13213	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	0.0	myb domain protein 3r-4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Saito T, et al. Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana. Plant Signal Behav, 2015. 10(3): p. e990817 [PMID:25806785] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325] Chen P, et al. Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage. Nat Commun, 2017. 8(1): p. 635 [PMID:28935922]