PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g005770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 99aa    MW: 11048.4 Da    PI: 7.3621
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g005770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.3e-084767526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f+++ G+C yG+rC++ H+
  Csa08g005770.1 47 VCTFYQK-GICFYGSRCRYDHV 67
                    6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.3571441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-61839IPR000571Zinc finger, CCCH-type
SMARTSM003564.11940IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2674269IPR000571Zinc finger, CCCH-type
SMARTSM003560.00214368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-54466IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-44766IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-54767IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MVCGGSALFF LSAQSPYVLR QFFVHGSCLK GENCEFYHDS KDPPNNVCTF YQKGICFYGS  60
RCRYDHVRAS SNAHRPPLTS DSESLDRSLC CESFHPVP*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g005770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419987.17e-68PREDICTED: E3 ubiquitin-protein ligase makorin isoform X2
SwissprotQ6IDS65e-34C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLR0G6502e-34R0G650_9BRAS; Uncharacterized protein
STRINGXP_010461709.12e-38(Camelina sativa)
STRINGXP_010486388.12e-38(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.22e-36C3H family protein