PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g006810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 202aa    MW: 22967.9 Da    PI: 8.8032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g006810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.7e-122361448
                     HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     d+vk +G+g+W++Ia++ g++R++k+c++rw +yl
   Csa08g006810.1  2 DYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYL 36
                     89*******************************97 PP
2Myb_DNA-binding61.61.7e-194287148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T++E++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l
   Csa08g006810.1 42 RGNFTEQEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNTHL 87
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.644136IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-18143IPR009057Homeodomain-like
PfamPF002497.4E-10236IPR001005SANT/Myb domain
CDDcd001671.12E-6236No hitNo description
SMARTSM007171.5238IPR001005SANT/Myb domain
SuperFamilySSF466892.77E-24283IPR009057Homeodomain-like
PROSITE profilePS5129428.7373791IPR017930Myb domain
SMARTSM007175.6E-194189IPR001005SANT/Myb domain
PfamPF002491.7E-184287IPR001005SANT/Myb domain
CDDcd001672.05E-144487No hitNo description
Gene3DG3DSA:1.10.10.601.1E-274491IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDYVKAHGKG HWNRIAKKTG LKRCGKSCRL RWMNYLSPNV KRGNFTEQEE DLIIRLHKLL  60
GNRWSLIAKR VPGRTDNQVK NYWNTHLSKK LGIKDPKTKQ SNGDIVYQIN LPNPTETSEA  120
TKITNIDGNN NILGDINLPN PTETSEATKI TNIDGNNNIL GDVIQEDRQG SNYLSSLWVH  180
EDEFELSTLT NMMDFIDGHC F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2419119108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g006810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937490.0AB493749.1 Arabidopsis thaliana At5g14750 mRNA for hypothetical protein, partial cds, clone: RAAt5g14750.
GenBankAY5196230.0AY519623.1 Arabidopsis thaliana MYB transcription factor (At5g14750) mRNA, complete cds.
GenBankBT0263460.0BT026346.1 Arabidopsis thaliana At5g14750 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084715.11e-123PREDICTED: transcription factor WER-like
SwissprotQ9SEI01e-117WER_ARATH; Transcription factor WER
TrEMBLA0A384KIP71e-114A0A384KIP7_ARATH; WER1
TrEMBLC0SVP61e-114C0SVP6_ARATH; Uncharacterized protein At5g14750 (Fragment)
TrEMBLD7M6M61e-114D7M6M6_ARALL; Uncharacterized protein
STRINGXP_010420126.11e-122(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.11e-119myb domain protein 66
Publications ? help Back to Top
  1. Savage N, et al.
    Positional signaling and expression of ENHANCER OF TRY AND CPC1 are tuned to increase root hair density in response to phosphate deficiency in Arabidopsis thaliana.
    PLoS ONE, 2013. 8(10): p. e75452
    [PMID:24130712]
  2. Cheng Y, et al.
    Brassinosteroids control root epidermal cell fate via direct regulation of a MYB-bHLH-WD40 complex by GSK3-like kinases.
    Elife, 2018.
    [PMID:24771765]
  3. Kiefer CS, et al.
    Correction: Arabidopsis AIP1-2 restricted by WER-mediated patterning modulates planar polarity.
    Development, 2015. 142(5): p. 1022
    [PMID:25715402]
  4. Kwak SH,Song SK,Lee MM,Schiefelbein J
    TORNADO1 regulates root epidermal patterning through the WEREWOLF pathway in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(12): p. e1103407
    [PMID:26451798]
  5. Zhu Y, et al.
    The Histone Chaperone NRP1 Interacts with WEREWOLF to Activate GLABRA2 in Arabidopsis Root Hair Development.
    Plant Cell, 2017. 29(2): p. 260-276
    [PMID:28138017]
  6. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]
  7. Mira MM, et al.
    Expression of Arabidopsis class 1 phytoglobin (AtPgb1) delays death and degradation of the root apical meristem during severe PEG-induced water deficit.
    J. Exp. Bot., 2017. 68(20): p. 5653-5668
    [PMID:29059380]
  8. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]