PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g006870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 171aa    MW: 19100.4 Da    PI: 4.6825
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g006870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.5e-1644130195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ff+v+++++  +s  +++p ++ e+   + + +kt +l    g+ W+v    +  +g++++++GW +Fv + +Lk+g+f++F +dg ++    v+
  Csa08g006870.1  44 FFSVFLSHY--SSESFMIPTSYYEHL--PRRLPKTAILIGNGGKIWKVAT--KSIRGQVYFEQGWPSFVADTELKDGEFLTFVFDGYNRY--EVS 130
                     677774444..44458*******554..456899****************..99999*************************98874433..555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-2041137IPR015300DNA-binding pseudobarrel domain
CDDcd100176.69E-1542132No hitNo description
PROSITE profilePS5086312.5242135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-1742136IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.1E-1644135IPR003340B3 DNA binding domain
PfamPF023626.8E-1344123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
LFLNFNLSTS FILRVEKRTN PLDQNSSCLV PTSSMASGDV LPRFFSVFLS HYSSESFMIP  60
TSYYEHLPRR LPKTAILIGN GGKIWKVATK SIRGQVYFEQ GWPSFVADTE LKDGEFLTFV  120
FDGYNRYEVS IYGHGGCKEI RAVVEVEDIS DDESESDNNS GESLVSVTQV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-16341372104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g006870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420133.14e-97PREDICTED: B3 domain-containing protein At3g06220-like
SwissprotQ1PES71e-65Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLR0H1D43e-80R0H1D4_9BRAS; Uncharacterized protein
STRINGXP_010420133.11e-96(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.29e-60B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]