PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g008230.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 731aa    MW: 81957.1 Da    PI: 6.0171
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g008230.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK75.37.4e-24351400251
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                     +k+++++d +++F+lpi++AA+e++vc+Tv+K+iCR+ G++RWPhRkik 
  Csa08g008230.2 351 TKKMTVKDFRMHFHLPIESAAREMKVCPTVIKKICREGGLMRWPHRKIKC 400
                     799*********************************************95 PP
2DUF26075.41.1e-23447544698
          DUF260   6 kvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     kvlr++C+++C ++  +     p++q++++ +++k++G++ +++l++a+p++ r+++++sl+ eA+ r+ +P+yG+vg+++++++ql+q+ ++++
  Csa08g008230.2 447 KVLRKGCSENCSIRSSLawiesPKSQANATVFLAKFYGRTGLVNLINAVPNHLRPAIFRSLLHEACGRIVNPIYGSVGLLWSGSWQLCQAPVDAV 541
                     89***************************************************************************************999888 PP

          DUF260  96 llk 98 
                     l +
  Csa08g008230.2 542 LKG 544
                     766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.086341422IPR003035RWP-RK domain
PfamPF020429.8E-21353399IPR003035RWP-RK domain
PROSITE profilePS5089113.234441547IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-18446539IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MAGDDDPKPS ALVKDNADEE DPYINDPLDE FRGFTDEDIQ NVMADFNPTL MDISFTENTP  60
PPSMCLPLPT DVDQTQLMHE LDLSITDYNI NDEFDGMSSF VDDDYTISWD MFEPSNDDPN  120
GNINNDVPQE IRNVGETTRL EVSTRVFGGA NGPNFETGGP STVHVPRIAD RMFVVSDPNF  180
VCPCCTMLRE VVHAKEREIM NTLIIFGGTG FLCHALLLTQ LLASDPMEPP PQPQPQPQRF  240
YLNDLTMEEV KNFIEEYCSE RVASGLTLMQ DTNAAFYQAM SVNSIFNQWP EPMLALPTCP  300
EVPTSLVSPD EALGVRPVPL NVIPREQATT GVPKERKKRK QTPLAAQRER TKKMTVKDFR  360
MHFHLPIESA AREMKVCPTV IKKICREGGL MRWPHRKIKC LLTRIESLKK SLCTAKDGEA  420
KARIEAEIER LQRDIERICS DALKNAKVLR KGCSENCSIR SSLAWIESPK SQANATVFLA  480
KFYGRTGLVN LINAVPNHLR PAIFRSLLHE ACGRIVNPIY GSVGLLWSGS WQLCQAPVDA  540
VLKGEAITPI ATDTAANGQG PPIEVYDIRH ISSKEENSGE NGSSHHRKRY KTRRAKPKRK  600
EKSITDHESS SSLSHHQSES NGKETVKFPV ELELKLGIEP VLNHVVVVPG QGRRFINAAA  660
RLEPKCLPKT GSHDFLRHTD QRLGESIAFV QLAFWYDTQT TVATNWHSGH RPEEDLLQLQ  720
ITAVENEAMK R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1586599RKRYKTRRAKPKRK
2592600RRAKPKRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g008230.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420284.10.0PREDICTED: uncharacterized protein LOC104705893
TrEMBLA0A178UGY41e-171A0A178UGY4_ARATH; Uncharacterized protein
STRINGXP_010420284.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-70LOB domain-containing protein 41