PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g009460.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 393aa MW: 43581.8 Da PI: 8.2183

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g009460.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.5e-17	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE++++v+a k++G W++I +++g ++t+ q++s+ qk+ Csa08g009460.1 56 RERWTDEEHKKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 100 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-17	50	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.277	51	105	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.7E-16	54	103	IPR006447	Myb domain, plants
SMART	SM00717	4.9E-13	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-14	56	99	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-9	56	96	IPR009057	Homeodomain-like
CDD	cd00167	5.79E-10	58	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MASSPLTANV QVAKAPLRNR VEEETADKRI QFNDKSFGGN DYAPKIRKPY TITKERERWT 60 DEEHKKFVEA LKLYGRAWRR IEEHVGTKTA VQIRSHAQKF FSKVAREATG GDGSSVEPIV 120 IPPPRPKRKP AHPYPRKFGN EADGTSRPVS PSEQDNRSPT SVLSTVGSEA LCSLDSSSPN 180 QSLSPVSSAS PPAALTTTAN APEEHETLKL ELFPRERLLH KESSVKEPTK QSLIKLFGKT 240 VVVSDSGISS TLTTSTYCKS PIQPLPRKLS PSKTLPIIKN GQEELLSCWI QVPLKQEDVE 300 NRCLDSGKAV QNEGSSTGSN SGSVDDTGHT DKTSEPETMV CQWEFKPSER SAFSELRRTN 360 SESNARGFGP YKKRKMMIEE EEQEEEEIHL HL*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MASSPLTANV QVAKAPLRNR VEEETADKRI QFNDKSFGGN DYAPKIRKPY TITKERERWT  60
DEEHKKFVEA LKLYGRAWRR IEEHVGTKTA VQIRSHAQKF FSKVAREATG GDGSSVEPIV  120
IPPPRPKRKP AHPYPRKFGN EADGTSRPVS PSEQDNRSPT SVLSTVGSEA LCSLDSSSPN  180
QSLSPVSSAS PPAALTTTAN APEEHETLKL ELFPRERLLH KESSVKEPTK QSLIKLFGKT  240
VVVSDSGISS TLTTSTYCKS PIQPLPRKLS PSKTLPIIKN GQEELLSCWI QVPLKQEDVE  300
NRCLDSGKAV QNEGSSTGSN SGSVDDTGHT DKTSEPETMV CQWEFKPSER SAFSELRRTN  360
SESNARGFGP YKKRKMMIEE EEQEEEEIHL HL*

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00515	DAP	Transfer from AT5G17300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g009460.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF378860	0.0	AF378860.1 Arabidopsis thaliana AT5g17300/MKP11_15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010420441.1	0.0	PREDICTED: protein REVEILLE 1-like
Swissprot	F4KGY6	0.0	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	R0FFU0	0.0	R0FFU0_9BRAS; Uncharacterized protein
STRING	XP_010420440.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6356	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	0.0	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]