PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g010060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WOX
Protein Properties Length: 213aa    MW: 23425.8 Da    PI: 6.7933
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g010060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.22.3e-079264057
                    -HHHHHHHHHHHHHHHHC CS
        Homeobox 40 terqVkvWFqNrRakekk 57
                     +++V++WFqNrR + ++
  Csa08g010060.1  9 GDANVFYWFQNRRSRSRR 26
                    579************997 PP
2Wus_type_Homeobox44.83e-151283865
  Wus_type_Homeobox 38 eLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +Le++G+++d+NVfyWFQNr++R+r++q
     Csa08g010060.1  1 MLEKFGAVGDANVFYWFQNRRSRSRRRQ 28
                       599***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.989127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-4632IPR009057Homeodomain-like
SuperFamilySSF466891.66E-6633IPR009057Homeodomain-like
PfamPF000467.8E-5926IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MLEKFGAVGD ANVFYWFQNR RSRSRRRQRQ LQAATAAPAT SGGAADHQHM TAMTMHQYPY  60
RNSEIDLGFG SCSNSSSANY FLNGTSSSSQ VSSFLLGLSS SSGGCETNGM ENFFTMFGHE  120
SDHHHQHSSN AHSMFCPSDE NSNFQYQQGL MTVFINGVPT EVTKGRIDMK ATFGEDSVLL  180
HSSGLPLPTD EFGFLMHSLQ HGQAYFLVPR QT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g010060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2514030.0AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084718.11e-158PREDICTED: WUSCHEL-related homeobox 12-like
SwissprotQ8GY252e-97WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBLD7LXM91e-106D7LXM9_ARALL; Predicted protein
STRINGXP_010420510.11e-157(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28192768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.29e-87WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]