PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g010450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 161aa    MW: 18740.2 Da    PI: 8.1834
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g010450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.21.1e-25171413126
             NAM   3 pGfrFhPtdeelvveyLkk.kvegkkleleevikevdiykvePwdLp.kkvka...eekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 
                     +GfrFhPt++el+ + L + kv+++ +++ e  +++d+y  ePw+L  ++  +   e +ewy+ ++ ++   +g+rk +  t +g+Wka gk  +
  Csa08g010450.1  17 VGFRFHPTEQELIRYCLGRnKVAKTWNKVLELQDKTDLYAKEPWRLThTE--TdffEPNEWYYLVTLAQV--SGSRKVKgETCEGRWKALGKLSD 107
                     7************99996615666668888888889**********8322..2245778****9999876..46777777999************ PP

             NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                     vlsk k+e++g k++L fy +   +++++ W+m ey
  Csa08g010450.1 108 VLSKdKREVIGKKRILSFYVK--GESNSSGWIMTEY 141
                     ***977788**********43..33458*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-2613149IPR003441NAC domain
PROSITE profilePS5100527.96915160IPR003441NAC domain
PfamPF023651.8E-1517141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSMVEKYNEN EQQEEFVGFR FHPTEQELIR YCLGRNKVAK TWNKVLELQD KTDLYAKEPW  60
RLTHTETDFF EPNEWYYLVT LAQVSGSRKV KGETCEGRWK ALGKLSDVLS KDKREVIGKK  120
RILSFYVKGE SNSSGWIMTE YYPLDGGSFQ NQVLSHLKGP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g010450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083859.11e-117PREDICTED: NAC domain-containing protein 30-like
TrEMBLR0HBL01e-76R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010420538.11e-116(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.18e-40NAC domain containing protein 88