PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g011090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 467aa    MW: 49271 Da    PI: 8.0609
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g011090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-115277227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +f rtG C yG+rC+F+H+p
  Csa08g011090.1 52 DEPDCIYFIRTGGCGYGSRCRFNHPP 77
                    6899********************97 PP
2zf-CCCH38.81.6e-12100125227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f+rtGtCk+G++Ck++H++
  Csa08g011090.1 100 GQPVCQHFMRTGTCKFGASCKYHHPR 125
                     5789********************96 PP
3zf-CCCH39.97.1e-13152176226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++f+rtG+Ck+G++C+F+H+
  Csa08g011090.1 152 GEKECSYFMRTGQCKFGSTCRFHHP 176
                     7899********************9 PP
4zf-CCCH41.32.6e-13300325227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++C++f+rtG Ck+G++C+F+H++
  Csa08g011090.1 300 EQPECQYFMRTGDCKFGSSCRFHHPM 325
                     5799********************95 PP
5zf-CCCH29.71.1e-09347369426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C +fa+ G Ck+G+ CkF H+
  Csa08g011090.1 347 AQCTHFAEHGVCKFGPACKFDHS 369
                     67********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.4E-45077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9295078IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-85277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-65578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-55676IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-698125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27798126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-699125IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10100125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5103125IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45150178IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10152176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6153177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4156175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798298326IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6298325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6299326IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5304324IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695343371IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-7347369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5347371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4349370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MERYGGAGEE EPRSDPSLEW SAPGNETGIE ASMWRLGLQG GGGDDSLPER PDEPDCIYFI  60
RTGGCGYGSR CRFNHPPDRA PVLGGGLRTE AAGQFPERMG QPVCQHFMRT GTCKFGASCK  120
YHHPRQGGGG GGRGDSVIPI SLNYMGFPLR PGEKECSYFM RTGQCKFGST CRFHHPVPPG  180
VHAPSAGPTM YPSLQSQSVV PSSQQYGVVL ARPQLLPGSY VPSPYGYGQM VLPPGMVPYS  240
GWNPYQASVS AIPSPGTQPS MGTSSVYGIR PLSPSAPAYQ SGPSSTGISN KEQTFPQRPE  300
QPECQYFMRT GDCKFGSSCR FHHPMEAASP KDITLSHIGL PLRPGAAQCT HFAEHGVCKF  360
GPACKFDHSI RSSSLSYNPS ASSLTDMPVA PHPLGSSSLG TLAPTSSSSS SEQRTKLLSS  420
SSIKPITTRA GGTGTVPSST TSGVSHPEPA ETNKDNSASI EAKTSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g011090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420624.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like isoform X2
RefseqXP_010420625.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like isoform X1
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLR0HAE20.0R0HAE2_9BRAS; Uncharacterized protein
STRINGXP_010420625.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]