PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g015570.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 185aa MW: 20692.3 Da PI: 9.1417

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g015570.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	86.6	4.5e-27	8	83	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++w+fF++r++++a+g r++r+t sgyWkatg+ +v+sk+++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ Csa08g015570.1 8 GDVEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSKDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 83 56789*********************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.362	1	108	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-29	8	108	IPR003441	NAC domain
Pfam	PF02365	7.8E-13	12	82	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSGERCRGDV EQWFFFVPRQ EREARGGRPS RTTGSGYWKA TGSPGPVFSK DNRMIGVKKT 60 MVFYTGKAPT GRKTKWKMNE YKAVEETVNA STAPQVRHEF SLCRVYVTTG SSRAFDRRPP 120 VGVLQPERML TNEVAVAGTS SFRAESSPET SISGGEQNVD LFMNVDLVEG LTEPIWEWEQ 180 LSWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-23	11	113	71	170	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-23	11	113	71	170	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-23	11	113	71	170	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-23	11	113	71	170	NO APICAL MERISTEM PROTEIN
3swm_A	9e-23	11	113	74	173	NAC domain-containing protein 19
3swm_B	9e-23	11	113	74	173	NAC domain-containing protein 19
3swm_C	9e-23	11	113	74	173	NAC domain-containing protein 19
3swm_D	9e-23	11	113	74	173	NAC domain-containing protein 19
3swp_A	9e-23	11	113	74	173	NAC domain-containing protein 19
3swp_B	9e-23	11	113	74	173	NAC domain-containing protein 19
3swp_C	9e-23	11	113	74	173	NAC domain-containing protein 19
3swp_D	9e-23	11	113	74	173	NAC domain-containing protein 19
4dul_A	8e-23	11	113	71	170	NAC domain-containing protein 19
4dul_B	8e-23	11	113	71	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g015570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010421027.1	1e-134	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-105	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	R0FHF5	1e-109	R0FHF5_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010421027.1	1e-133	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-96	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]