PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g017340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 331aa    MW: 38305.6 Da    PI: 7.4358
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g017340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05233256123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+Cp+C+ +F ++  +  Hi++ H
  Csa08g017340.1 233 YTCPKCNNVFETSQKFAAHISSiH 256
                     9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.577233261IPR007087Zinc finger, C2H2
PROSITE patternPS000280235256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTIIPNGLNS YGNDTMNIRS FSPIETSSNF RNFESKKVES MFVTSGYTNH HALYSSSNVS  60
SSSFNFNNSH VAYQMRENMV STFGMPCITQ IPNNPHFSQI SVTQTITNSY SAIIPTNNLI  120
TAQNDYHRAI NPNIFNSSFY LPNYGNKQQE ILNPTPLNTV FPHQIFVYLA QLDIFSCSPK  180
YDHDQIVPHH QPPKKQYRPT TYFEENLEGV NSEEYCEYDG RTHSLPYKKY GPYTCPKCNN  240
VFETSQKFAA HISSIHYKNE TINERFKRYN ARNKKRICKT NQMIYEECRN IHPEERVVEQ  300
NGGNNNIAID PEAYRHHIVV KEEPTYDIFH *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g017340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424242.10.0PREDICTED: uncharacterized protein LOC104709301
TrEMBLR0GZ561e-160R0GZ56_9BRAS; Uncharacterized protein
STRINGXP_010424242.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-134C2H2-like zinc finger protein