PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g017960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 358aa    MW: 39611.5 Da    PI: 9.9379
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g017960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.4e-12116160347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT  E+ +++ + +++G+g+W++I+r    +Rt+ q+ s+ qky
   Csa08g017960.1 116 AWTSNEHRQFLLGLAKYGKGDWRSISRNSVRTRTPTQVASHAQKY 160
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.63862IPR017884SANT domain
SMARTSM007172.9E-6961IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-81167IPR009057Homeodomain-like
CDDcd001672.53E-61256No hitNo description
PROSITE profilePS5129415.618109165IPR017930Myb domain
SuperFamilySSF466892.69E-15110166IPR009057Homeodomain-like
SMARTSM007171.2E-8113163IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.0E-15113163IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.2E-10114160IPR009057Homeodomain-like
PfamPF002492.0E-9116160IPR001005SANT/Myb domain
CDDcd001672.74E-8116161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTLGWNLSVG SSWSRDDDTA FERALAIYED ETQICWENIA AVVPGKTTEL IIEHYNILIR  60
DVMDIESGRV PLPDYGVPDE PNPYARGKGI SIGDNSRKSK QKGKEKHKHK RQKGVAWTSN  120
EHRQFLLGLA KYGKGDWRSI SRNSVRTRTP TQVASHAQKY FQRLNSKNKH RNRPSIHDIT  180
VDEENRNISP EQGAIGTWQN GNVNLASTSN NQAIQTTSKP SLDLPVHRRP NIWNTQALSQ  240
PSVNLPTYGA PTIWNAQAAL PPPPPPPCTI WNAQAALPPP PPASIPVYGT TLSSMNQPMV  300
GQMPSHFGTN MNHFAQPHMT PGVQHYPLPS YPGHSAPINM GSSIPYGDKT YATKSQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-141075873RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g017960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424253.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN68e-70SRM1_ARATH; Transcription factor SRM1
TrEMBLD7M2B81e-129D7M2B8_ARALL; Predicted protein
STRINGXP_010424253.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-112Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]