PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g018430.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 303aa MW: 33734 Da PI: 6.6134

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g018430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	67.9	1.6e-21	115	172	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr Yr + +gC+++k+v+rs+e++ ++ei Y+g H ++ Csa08g018430.1 115 LDDGFSWRKYGQKDILGAKFPRCTYRKS-QGCEATKHVQRSDENQMLFEISYRGIHSCS 172 59******************999965.69***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-20	113	173	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-18	114	173	IPR003657	WRKY domain
PROSITE profile	PS50811	17.075	115	170	IPR003657	WRKY domain
SMART	SM00774	6.3E-32	115	173	IPR003657	WRKY domain
Pfam	PF03106	1.5E-20	116	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEKKSSNGDW EKMKKEINEL MTEGRDYAHQ FGSASSQETR EHLAKKILES YHKSLTIMNY 60 SGEQDSPHAH GGGGSPKSDD SDQEPLVITK SSKKSMPKWT RKVIITPGAG IDRTLDDGFS 120 WRKYGQKDIL GAKFPRCTYR KSQGCEATKH VQRSDENQML FEISYRGIHS CSQAANVGST 180 IPVQNPKPNQ TQEHENLDIV KDSLDDYNHG GHLHHNLHYP MSSTPNLESD NPYMLQMRDH 240 NMDFFGSTSF SSDLGTNINY NFPASGSASH STSNSPSTIP LESPFDSYDP NHPYGGGFGG 300 FY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SUP6}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g018430.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:22268143}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY088401	0.0	AY088401.1 Arabidopsis thaliana clone 6469 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010421221.1	0.0	PREDICTED: probable WRKY transcription factor 30
Refseq	XP_010454702.1	0.0	PREDICTED: probable WRKY transcription factor 30
Swissprot	Q9FL62	1e-179	WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBL	D7M2H2	0.0	D7M2H2_ARALL; Uncharacterized protein
STRING	XP_010421221.1	0.0	(Camelina sativa)
STRING	XP_010454702.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12595	19	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	1e-156	WRKY DNA-binding protein 30

Publications ? help Back to Top
Jiang W,Wu J,Zhang Y,Yin L,Lu J Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses. Protoplasma, 2015. 252(5): p. 1361-74 [PMID:25643917] Kanofsky K,Bahlmann AK,Hehl R,Dong DX Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters. Plant Cell Rep., 2017. 36(6): p. 971-986 [PMID:28341984]