PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g018810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26729.5 Da    PI: 9.6832
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g018810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.61.6e-182270350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                     ++ s++++ ++ R ++++KKA+ELS+LCd+ev+vi++  +g+l ++++
  Csa08g018810.1 22 LSSVSKKTTNLAMREQTMFKKASELSILCDVEVCVIYYNRDGELvRTWP 70
                    67889999**********************************9746887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.6991265IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-101271IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.69E-1616105IPR002100Transcription factor, MADS-box
CDDcd002668.16E-212097No hitNo description
PfamPF003192.0E-132666IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLTKDKTTKL LSVRNRRCFK KLSSVSKKTT NLAMREQTMF KKASELSILC DVEVCVIYYN  60
RDGELVRTWP EDQSKVRDMA ERFSKLSDRE RRKKSTNLSQ FLNKKKTTLK YKKKTSFDIT  120
EDNKFSEKLL EMEASLESSL RVCQDQLLRV LQNQTKPPDQ NPPPVVSSAG FFTPDPSLMS  180
GTEQYLSTPS LTQQHQSKVS VFLYNHDNGS FCQLPDSSVS TFDPSTMLDY VF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g018810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424267.21e-170PREDICTED: agamous-like MADS-box protein AGL53
SwissprotQ7X9N25e-68AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1197e-86R0H119_9BRAS; Uncharacterized protein
STRINGXP_010424267.11e-170(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27944.11e-60M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]