PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g023770.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 354aa MW: 40681.8 Da PI: 6.8997

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g023770.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.9	3.5e-10	48	83	2	37
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskk 37 W ++e+l Li +r em++ ++++k++k+lWe++s+k Csa08g023770.1 48 WVQDETLSLISLRGEMDNLFNTSKSNKHLWEQISSK 83 **********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MMIDVTTSNG DLPTQQQHHH HHQIILLGDS SGGEDHEIKT PKKRAETWVQ DETLSLISLR 60 GEMDNLFNTS KSNKHLWEQI SSKGLIGHQL CSLRKLSIKM IKQRVEEQRR CAITKRLKIS 120 LEKETRKVAL YKSPATPPPS SSAKVDSFMQ FTDKGFEDSG ISFTSVEVLA IIGKPIAQQL 180 MVDNVKRILS CGSCLVLNLD MNCLMVFLWP LLLLIPSQQM EFLLGIGEMP LETVKQSRKL 240 FRSAFRLRTR RAFWLEDEEQ VVRSLDRDMP LGNYTLHVDE GIAVRVCHYD ESDPLPVHQE 300 EKIFYTEEDY RDFLARRGWT CLREFDAFGN IDMVRNIDNM DDLQPGVLYR GMR*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MMIDVTTSNG DLPTQQQHHH HHQIILLGDS SGGEDHEIKT PKKRAETWVQ DETLSLISLR  60
GEMDNLFNTS KSNKHLWEQI SSKGLIGHQL CSLRKLSIKM IKQRVEEQRR CAITKRLKIS  120
LEKETRKVAL YKSPATPPPS SSAKVDSFMQ FTDKGFEDSG ISFTSVEVLA IIGKPIAQQL  180
MVDNVKRILS CGSCLVLNLD MNCLMVFLWP LLLLIPSQQM EFLLGIGEMP LETVKQSRKL  240
FRSAFRLRTR RAFWLEDEEQ VVRSLDRDMP LGNYTLHVDE GIAVRVCHYD ESDPLPVHQE  300
EKIFYTEEDY RDFLARRGWT CLREFDAFGN IDMVRNIDNM DDLQPGVLYR GMR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	3e-15	42	83	1	42	DNA binding protein GT-1
2jmw_A	2e-15	42	83	1	42	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g023770.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB072370	1e-127	AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291280.2	1e-142	trihelix transcription factor GT-4 isoform X2
Swissprot	Q9LU92	1e-122	TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBL	R0HJX1	1e-140	R0HJX1_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010454951.1	1e-149	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	1e-117	Trihelix family protein