PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g026450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25838.8 Da    PI: 9.5343
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g026450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-18342241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    +ien++ r+ tf kR+ g+lKKA+EL +LCd+ ++vi+ s
  Csa08g026450.1  3 FIENETARKSTFKKRKRGVLKKAHELATLCDVPICVIVNS 42
                    8************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.0E-17153IPR002100Transcription factor, MADS-box
CDDcd002662.01E-22178No hitNo description
PROSITE profilePS5006616.694142IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-21288IPR002100Transcription factor, MADS-box
PfamPF003192.1E-17342IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAFIENETAR KSTFKKRKRG VLKKAHELAT LCDVPICVIV NSAYESNPEV WPSREEADKV  60
VSQWRMMSVM DQTKKMVNQE SFLQQRITKA TESWRKARRE NKELEMKNIM FDCLSGKTLV  120
SRLPKSDLRD FGSVIEQHLK DVNRRMEILK RNDDESSSSL VPIDAATTSS VMPMIEMGSS  180
SSSVMPMIEM GSSSVGFHEK ILEQIQNTLN MKNTNKDLDL NKKQW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g026450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8306900.0AB830690.1 Turritis glabra AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e058.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421525.11e-166PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLS6B3Z01e-120S6B3Z0_TURGL; Agamous-like MADS-box protein AGL35
STRINGXP_010421525.11e-166(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.14e-99M-type_MADS family protein