PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g027750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 290aa    MW: 32855.2 Da    PI: 9.5326
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g027750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81.1e-163178450
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    ++ s++++ +  R ++++KKA+ELS+LCd+ev vi++  +gkl ++++
  Csa08g027750.1 31 SSVSKKTTNLPSREQTMFKKASELSILCDIEVYVIYYDRDGKLiKTWP 78
                    677899999*********************************856786 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-71979IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.7783080IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-1434104IPR002100Transcription factor, MADS-box
CDDcd002665.33E-1834105No hitNo description
PfamPF003194.1E-114373IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTSSSMLTKD KTTKLLSVRN RRCFKKQPSL SSVSKKTTNL PSREQTMFKK ASELSILCDI  60
EVYVIYYDRD GKLIKTWPED QSKVREMAER FSKLNDRERR KKSTDLSLFL NKKTLKDKKT  120
SFDITDNKFS EKVLEMEASL ESSLRVLQDK LLRLQNQTEP DQNPVVSSAG FFTTDPSLMS  180
GVSKTEQDLS TPSLTQQHRQ SKVSVFLYNH ENGSFCQLPD SVSSFDPSMS TASLGAQGLF  240
LRSNDSDLSI VFPPQMQTQT PPLVHFVQFA GWNQTPSSFA DPMMFSSYN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g027750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455071.10.0PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ7X9H92e-99AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLR0H1191e-130R0H119_9BRAS; Uncharacterized protein
STRINGXP_010455071.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.11e-102AGAMOUS-like 93
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]