PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g027770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22889 Da    PI: 7.4526
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g027770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.6e-163174447
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    ++ s++++ +  R ++++K A+ELS+LCd+ev++i+++ +g+l 
  Csa08g027770.1 31 SSVSKKTTNLPLREQTMFKIASELSILCDIEVCLIYYGRDGELV 74
                    677888999999*****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-41979IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.5033080IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-113487IPR002100Transcription factor, MADS-box
PfamPF003191.7E-94374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MASSSMLTKD KTKNLLSVRN RRCFKKQPSL SSVSKKTTNL PLREQTMFKI ASELSILCDI  60
EVCLIYYGRD GELVKIWPED QSKTLKDKKT SFDNKDHRFS EKVLEMEASL ESALRLLQDK  120
LLRLQNQTEP DQNPVVSSAG FFTTDPSLMS GVSKTEQDLS TPSLTQQHQS KVSVFLYNHD  180
NGSFCQLPHS VSTFDPSIDD FV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g027770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412171e-41AY141217.1 Arabidopsis thaliana MADS-box protein AGL53 mRNA, complete cds.
GenBankCP0026881e-41CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF15P111e-41AF160760.1 Arabidopsis thaliana BAC F15P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084677.11e-141PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL53
SwissprotQ7X9N28e-58AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1191e-78R0H119_9BRAS; Uncharacterized protein
STRINGXP_010424393.11e-115(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27944.15e-52M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]