PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g029500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 168aa    MW: 19133.6 Da    PI: 8.2023
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g029500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF222.2e-071551440
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    e k +r v  skRr++++  A  L+ L +a++av + 
  Csa08g029500.1 15 ETKQQRAVACSKRRQTVFSNAADLCHLSGANIAVFVT 51
                    77999****************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-8463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.386450IPR002100Transcription factor, MADS-box
CDDcd002661.07E-16589No hitNo description
SuperFamilySSF554556.41E-13690IPR002100Transcription factor, MADS-box
PfamPF003198.3E-71563IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKKGTKRKIE TKKRETKQQR AVACSKRRQT VFSNAADLCH LSGANIAVFV TFPSEISNVV  60
YSFSGYSPAH EIADCYLNRK PPPKIEVKPQ SKLGFWWEDP DLYHSCDDLS ELNILEDRIE  120
RVKKHVMACL EKKEKLQSVS NTEQNPNTYS LDEDYDRGFD LNSSPST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g029500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937621e-116AB493762.1 Arabidopsis thaliana At5g27130 gene for hypothetical protein, partial cds, clone: RAAt5g27130.
GenBankCP0026881e-116CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankTM021B041e-116AF007271.1 Arabidopsis thaliana BAC TM021B04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090030.11e-112PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0HBN42e-87R0HBN4_9BRAS; Uncharacterized protein
STRINGXP_010424391.11e-116(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.15e-74AGAMOUS-like 39