PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g029800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 181aa    MW: 20816.5 Da    PI: 6.9377
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g029800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.78.7e-1895178997
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     dv k     +pkkf++ h+ +  ++k+ ++ +++g +sWev++    ++ +  +++GW++F+k+ gL++gD+++Fkl++   +e +vkv 
  Csa08g029800.1  95 DVKKDEETGIPKKFVDMHMPN--QTKMFKIHHPTGkKSWEVTY--VVTDVQSRFSAGWSRFAKELGLEVGDVCTFKLIE--PTEICVKVS 178
                     788888899*********855..778999***99989******..555555569**********************986..555677775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.23887180IPR003340B3 DNA binding domain
SMARTSM010191.8E-1193180IPR003340B3 DNA binding domain
PfamPF023621.7E-1395177IPR003340B3 DNA binding domain
CDDcd100171.08E-1495179No hitNo description
Gene3DG3DSA:2.40.330.105.6E-18100178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-17102177IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVRNRVFGQV MEEGDNPAFF KILRREDLSS EIMFVNDNGL GENEYLTFTH EANRCFNVNT  60
YEENGKEMLK PRQSSTITSS SGRSKREERN SNYIDVKKDE ETGIPKKFVD MHMPNQTKMF  120
KIHHPTGKKS WEVTYVVTDV QSRFSAGWSR FAKELGLEVG DVCTFKLIEP TEICVKVSKE  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g029800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084284.11e-127PREDICTED: B3 domain-containing protein At5g18000-like
SwissprotQ9FJG22e-41Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLD7LXR42e-49D7LXR4_ARALL; Transcriptional factor B3 family protein
STRINGXP_010424401.11e-108(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-43VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]