PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g030020.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 266aa MW: 30047.7 Da PI: 10.2465

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g030020.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.3	6.4e-28	204	260	4	59
SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +y+WrKYGqK++kgs++ r+YY+C+s gCp++k+ver ++++++++tYegeHnh+ Csa08g030020.1 204 EYSWRKYGQKPIKGSPHRRGYYKCSSVrGCPARKHVERYVDETSLLIVTYEGEHNHS 260 7**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.1E-16	164	199	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.3E-30	189	260	IPR003657	WRKY domain
PROSITE profile	PS50811	27.485	196	262	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-24	199	261	IPR003657	WRKY domain
SMART	SM00774	9.4E-31	201	261	IPR003657	WRKY domain
Pfam	PF03106	4.0E-24	204	259	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MVETRESVSK FKRVSSLLTR GLGQRKIKKL NSNYKFSAFL LPQHMFLQSP ICDNNAISGC 60 IQVLAPKPLQ IVPAGYGEID PKQKPSHHPS LMLFDQKMCV DKSFLELKPP SFRAVDPKPY 120 QFIHSHQQGV YSRSKSGLSL RFDGSCGGSC YSLVSQMDQD PFQEDLKCGS RSKCHCSKKR 180 KLRVKRSIKV PAISNTIADI PPNEYSWRKY GQKPIKGSPH RRGYYKCSSV RGCPARKHVE 240 RYVDETSLLI VTYEGEHNHS RLPSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	194	263	7	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g030020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020876190.1	1e-143	probable WRKY transcription factor 74
Swissprot	Q93WU6	1e-142	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	D7M6W2	1e-140	D7M6W2_ARALL; Uncharacterized protein
STRING	AT5G28650.1	1e-141	(Arabidopsis thaliana)
STRING	fgenesh2_kg.6__2791__AT5G28650.1	1e-141	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	1e-129	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]