PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g036280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 484aa    MW: 53734.9 Da    PI: 5.0896
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g036280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.67.2e-1021044761373
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lL+++Aea +  +++  l++ +Larl++l+sp + ++m+Rl+a+ft++L++ l r  +++ +  +  ++  ++++++++a+++++++sP+++
  Csa08g036280.1 104 LVHLLVAAAEASTGANKSpeLTRVILARLKDLVSPGDrTNMERLVAHFTNGLSKLLER--DNVLRPNNHCND-VYDQADVISAFQMLQNMSPYVN 195
                     689********998777666***************9989*******************..777765544444.4679****************** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                     f++lt+ qaIle+v+ e+r+Hi+D+di +G+QWp+L+qaL sR+   ++ +lRiT+++++++g  s  +++e g+rL+ fAe++g pf+f+    
  Csa08g036280.1 196 FGYLTTTQAILESVKYERRIHIVDYDIAEGIQWPSLMQALLSRNtgTSAQHLRITALSRATNGkkSVAAVQEAGRRLTAFAESIGQPFSFHH-CK 289
                     ********************************************655577*********999999999***********************9.67 PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpr 277
                      + +++++++L++ +gEa+++n++l+l r+ +++ ++     ++L   k+l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdslea+l+ 
  Csa08g036280.1 290 LDNDAFNTSSLKLVRGEAVVINCMLHLPRFSHKTPNSVI---SFLLEAKTLNPKLVTLVHEEVGLmGNQCFLYRFMDLLHQFSAIFDSLEASLSI 381
                     799***************************977777666...9*********************99***************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvS 371
                     ++  r +v+r+++g+++ n+++  +a+   + e++++W ++le+ GF+++++s  + +qaklll+ ++ dgy+vee  ++ lvlgWk+r+Lvs+S
  Csa08g036280.1 382 TNPVRGFVDRVFIGPWVANWLTRITAD-DSEVESFASWPQWLETNGFEAMEVSFANRCQAKLLLSLFN-DGYSVEELgQNGLVLGWKSRRLVSAS 474
                     **************************9.9999************************************.******98789999************ PP

            GRAS 372 aW 373
                     +W
  Csa08g036280.1 475 FW 476
                     ** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.2778457IPR005202Transcription factor GRAS
PfamPF035142.5E-99104476IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.808.8E-4138214No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MTMNYPYEDF LDLFFSTKTN TPVTAASTSS CGYSLNDLDV DWGCDFRDVI ESIMGDEGVI  60
METESAPMLH SQEGICNSAS TGLSVTDGVS VEEPKLDESK GFRLVHLLVA AAEASTGANK  120
SPELTRVILA RLKDLVSPGD RTNMERLVAH FTNGLSKLLE RDNVLRPNNH CNDVYDQADV  180
ISAFQMLQNM SPYVNFGYLT TTQAILESVK YERRIHIVDY DIAEGIQWPS LMQALLSRNT  240
GTSAQHLRIT ALSRATNGKK SVAAVQEAGR RLTAFAESIG QPFSFHHCKL DNDAFNTSSL  300
KLVRGEAVVI NCMLHLPRFS HKTPNSVISF LLEAKTLNPK LVTLVHEEVG LMGNQCFLYR  360
FMDLLHQFSA IFDSLEASLS ITNPVRGFVD RVFIGPWVAN WLTRITADDS EVESFASWPQ  420
WLETNGFEAM EVSFANRCQA KLLLSLFNDG YSVEELGQNG LVLGWKSRRL VSASFWASHE  480
SNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4212847641378Protein SCARECROW
5b3h_A8e-4312847640377Protein SCARECROW
5b3h_D8e-4312847640377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g036280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421850.20.0PREDICTED: scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLR0HD470.0R0HD47_9BRAS; Uncharacterized protein
STRINGXP_010421850.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein