PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g044320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 1231aa    MW: 138854 Da    PI: 6.0128
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g044320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30587644159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDgy WrKYGqK+ kg  fprsYY+Ct++gC vkkkvers  d++v+ei Y+g Hnhe
  Csa08g044320.1 587 VDDGYYWRKYGQKSAKGEMFPRSYYKCTHPGCLVKKKVERSV-DGQVTEILYKGVHNHE 644
                     59****************************************.***************8 PP
2WRKY100.41.1e-31741798259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg++WrKYGqK+vkgs++prsY++Ct  gC ++k+ver+a+dpkvv++tYeg+Hnh+
  Csa08g044320.1 741 DDGFRWRKYGQKVVKGSPYPRSYFKCTKVGCGMRKHVERAATDPKVVVTTYEGKHNHD 798
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078871.6E-281130IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF522009.02E-5158204IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.3005.4E-5285364IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525404.6E-12288363IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.7E-8325340No hitNo description
PROSITE profilePS5147715.091424494IPR003822Paired amphipathic helix
SuperFamilySSF477629.29E-19428492IPR003822Paired amphipathic helix
Gene3DG3DSA:1.20.1160.112.0E-16429492IPR003822Paired amphipathic helix
PfamPF026713.1E-13446491IPR003822Paired amphipathic helix
PROSITE profilePS5081123.537582646IPR003657WRKY domain
SuperFamilySSF1182901.31E-24583646IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-26585646IPR003657WRKY domain
SMARTSM007743.5E-33587645IPR003657WRKY domain
PfamPF031068.8E-23588644IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-32728800IPR003657WRKY domain
SuperFamilySSF1182902.22E-27732800IPR003657WRKY domain
PROSITE profilePS5081135.714735800IPR003657WRKY domain
SMARTSM007741.1E-36740799IPR003657WRKY domain
PfamPF031068.0E-25741798IPR003657WRKY domain
SuperFamilySSF522005.23E-8866989IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525404.32E-1110041083IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.5E-410171098IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520471.18E-1311001230No hitNo description
Gene3DG3DSA:3.80.10.107.0E-1011081229IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003643.7E-811931209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1231 aa     Download sequence    Send to blast
EVWRLEGIPK YGVEASRLAE EGIHTVQELR RCIAMNPDAF HRILGALVSK KTLDTIVSHA  60
MSCHEDGKKY YAYKVQAQGA FFLFNDFYEL EEVSFDGVTT LNSNELTFKQ KELIDKLKLD  120
AYENVTRFTE VDKQIFEHNP RDSVSESSDK SNVLPPDTSR ESECDVFISY NEKDVSSSFI  180
SHLHASLCQK EISVFDKFDV VPEYRVMIEF IRSGDVSSKY SIFLNRKERG VSQMWYRLSQ  240
SSIGNKTNLE RYSLQNKRMW SICDVLKEAP DYILTKESES ELIGEIVRDA LKELCSSDKD  300
KMIGIDAQLD EILSLLCIES TDVRKIGIWG TAGMGKTTIA EKVFRRISVH YKSCVFLKDI  360
HEQEESTGAA DAASDYYPRV GSSGEGNNSS SSSDVDARFK RKISTGLMVS QSPSVSTVSS  420
PCIGRLTTGA LAYLESVKDT FQDDKERYDT FLEVMKDYDD QSRDDTNGII ARVKDLFKDH  480
DDLLLGFNIF LPRWYQITLP PKDETPVEFL DKFEGTYGMT YQQVVAQAVQ GIQAHVNMQP  540
QSEYPPSSAF QSFPSGQPQI LTPAPDSSVL AHSSTSGITS IEPLNRVDDG YYWRKYGQKS  600
AKGEMFPRSY YKCTHPGCLV KKKVERSVDG QVTEILYKGV HNHEPPKHAK KGSTTTLSGG  660
SIHNNRRSSG LAASQFSSNK QQEAASDSKE VNSGDTAEDE PETKRRIKQV EDCEPAAATS  720
HRTVIEPVFT VRTLSEVDLI DDGFRWRKYG QKVVKGSPYP RSYFKCTKVG CGMRKHVERA  780
ATDPKVVVTT YEGKHNHDLP AAKSRSHGSV IAENSANFVS FPPTSSKNLQ DADLSVGFPR  840
SQSLFVDEAL TDTSDFFGPP STSVTFSASK HYDVVIRYGR GDISNDDFIS HLRASLCRRG  900
ISVYEELNEG DAIPQCWVLI ILLTSTYVPS NLLHILERQH TDNLMIYPIF YRLSPNDFVC  960
NSKNYDIFFF QDEPKRWQAA LKEITQMPGY TLTDKSESNL IDEIVRDTLK VLCYGDKVNM  1020
VGRDMQVEEI LSLMCIESLD VRSIGIWGAV GIGKTTIAEE IFRRISVQYE TCVFLKDLHK  1080
QVEVKGHDAG TSAIEGIFLD MLNLTFDATP NVFEKMCNLR LLKLYCSKVE EKHGVYFPQG  1140
LEYLPSKLRL LHWEHYPLSS LPKSFNPENL SLEKLKRMTL SYSYELTKIP RLSSAPNLEL  1200
LDLEGCNSLL SISQSISYLT KLVFLNLKDC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38573801378Probable WRKY transcription factor 4
2lex_A4e-38573801378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g044320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496381e-134AL049638.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA project).
GenBankAL1615331e-134AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankCP0026871e-134CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084085.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 19
SwissprotQ9SZ671e-115WRK19_ARATH; Probable WRKY transcription factor 19
TrEMBLD7M0D51e-121D7M0D5_ARALL; Predicted protein
STRINGXP_010422158.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM800346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.11e-118WRKY family protein
Publications ? help Back to Top
  1. Su SH,Krysan PJ
    A double-mutant collection targeting MAP kinase related genes in Arabidopsis for studying genetic interactions.
    Plant J., 2016. 88(5): p. 867-878
    [PMID:27490954]