PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g044320.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 1153aa    MW: 130072 Da    PI: 6.4012
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g044320.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-30228285159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDgy WrKYGqK+ kg  fprsYY+Ct++gC vkkkvers  d++v+ei Y+g Hnhe
  Csa08g044320.2 228 VDDGYYWRKYGQKSAKGEMFPRSYYKCTHPGCLVKKKVERSV-DGQVTEILYKGVHNHE 285
                     59****************************************.***************8 PP
2WRKY100.59.8e-32382439259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg++WrKYGqK+vkgs++prsY++Ct  gC ++k+ver+a+dpkvv++tYeg+Hnh+
  Csa08g044320.2 382 DDGFRWRKYGQKVVKGSPYPRSYFKCTKVGCGMRKHVERAATDPKVVVTTYEGKHNHD 439
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5147715.09165135IPR003822Paired amphipathic helix
SuperFamilySSF477628.63E-1969133IPR003822Paired amphipathic helix
Gene3DG3DSA:1.20.1160.111.9E-1670133IPR003822Paired amphipathic helix
PfamPF026712.8E-1387132IPR003822Paired amphipathic helix
PROSITE profilePS5081123.537223287IPR003657WRKY domain
SuperFamilySSF1182901.23E-24224287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-26226287IPR003657WRKY domain
SMARTSM007743.5E-33228286IPR003657WRKY domain
PfamPF031068.1E-23229285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-32369441IPR003657WRKY domain
SuperFamilySSF1182902.09E-27373441IPR003657WRKY domain
PROSITE profilePS5081135.714376441IPR003657WRKY domain
SMARTSM007741.1E-36381440IPR003657WRKY domain
PfamPF031067.4E-25382439IPR003657WRKY domain
SuperFamilySSF522004.71E-8507630IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525409.32E-37645907IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000090.00358662808No hitNo description
PfamPF009314.8E-17667876IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3009.1E-9680818IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.5E-14684699No hitNo description
PRINTSPR003642.5E-14760774No hitNo description
SuperFamilySSF467851.09E-7886988IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.80.10.106.0E-1210031151IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.36E-1810041152IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.5E-1411151131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1153 aa     Download sequence    Send to blast
MSEKEESTGA ADAASDYYPR VGSSGEGNNS SSSSDVDARF KRKISTGLMV SQSPSVSTVS  60
SPCIGRLTTG ALAYLESVKD TFQDDKERYD TFLEVMKDYD DQSRDDTNGI IARVKDLFKD  120
HDDLLLGFNI FLPRWYQITL PPKDETPVEF LDKFEGTYGM TYQQVVAQAV QGIQAHVNMQ  180
PQSEYPPSSA FQSFPSGQPQ ILTPAPDSSV LAHSSTSGIT SIEPLNRVDD GYYWRKYGQK  240
SAKGEMFPRS YYKCTHPGCL VKKKVERSVD GQVTEILYKG VHNHEPPKHA KKGSTTTLSG  300
GSIHNNRRSS GLAASQFSSN KQQEAASDSK EVNSGDTAED EPETKRRIKQ VEDCEPAAAT  360
SHRTVIEPVF TVRTLSEVDL IDDGFRWRKY GQKVVKGSPY PRSYFKCTKV GCGMRKHVER  420
AATDPKVVVT TYEGKHNHDL PAAKSRSHGS VIAENSANFV SFPPTSSKNL QDADLSVGFP  480
RSQSLFVDEA LTDTSDFFGP PSTSVTFSAS KHYDVVIRYG RGDISNDDFI SHLRASLCRR  540
GISVYEELNE GDAIPQCWVL IILLTSTYVP SNLLHILERQ HTDNLMIYPI FYRLSPNDFV  600
CNSKNYDIFF FQDEPKRWQA ALKEITQMPG YTLTDKSESN LIDEIVRDTL KVLCYGDKVN  660
MVGRDMQVEE ILSLMCIESL DVRSIGIWGA VGIGKTTIAE EIFRRISVQY ETCVFLKDLH  720
KQVEVKGHDA VREDFLSKVL EIEPHIIRIS DIKTSFLRNR LQRKRVFVIL DDVNDYKDVE  780
TFLGKLNYFG PGSRLIMTSR NRRVFVLCKI DHVYEVKPLD IPNSLLLLNH EISQFVLLPE  840
VYKTMSLELV KFSNGNPQVL QFLSSIDVEW NRYSQEVQNI SPIHIPGIYE RSCCGLDDNE  900
MSIFLDIACF FNRMDKDNVA MLLDGCGFSA HVGFKGLVDK SLLTISQHNL VDMLGFIQAT  960
GREIVRQESA DRPGDRSRLW NVEDIRDVFI NDTGTSAIEG IFLDMLNLTF DATPNVFEKM  1020
CNLRLLKLYC SKVEEKHGVY FPQGLEYLPS KLRLLHWEHY PLSSLPKSFN PENLVELNLS  1080
SSCTKKLWKG KKSLEKLKRM TLSYSYELTK IPRLSSAPNL ELLDLEGCNS LLSISQSISY  1140
LTKLVFLNLK DC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38214442378Probable WRKY transcription factor 4
2lex_A1e-38214442378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g044320.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496380.0AL049638.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA project).
GenBankAL1615330.0AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084085.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 19
SwissprotQ9SZ670.0WRK19_ARATH; Probable WRKY transcription factor 19
TrEMBLD7M0D50.0D7M0D5_ARALL; Predicted protein
STRINGXP_010422158.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.30.0WRKY family protein
Publications ? help Back to Top
  1. Su SH,Krysan PJ
    A double-mutant collection targeting MAP kinase related genes in Arabidopsis for studying genetic interactions.
    Plant J., 2016. 88(5): p. 867-878
    [PMID:27490954]