PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g044470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 453aa    MW: 50989.6 Da    PI: 4.743
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g044470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like582.2e-18219278155
         G2-like   1 kprlrWtpeLHerFveaveqLGGse.kAtPktilel....mkvkgLtlehvkSHLQkYRl 55 
                     kpr+ Wt eLH++F  ave++        Pk il++    m+v+gLt+++v+SHLQkYR 
  Csa08g044470.1 219 KPRMSWTAELHQKFEAAVEKISRVGsTPYPKDILKCmqeeMNVQGLTRNNVASHLQKYRQ 278
                     79*****************995433034689999872223689****************6 PP
2Response_reg61.15.9e-21461501105
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vd + + + l+++++ k  y +v+  ++geea++ l +++  +Dl++    mp+++G ++l +i +e  +lp+++++ ++++e++ + +k G
  Csa08g044470.1  46 VLLVDADSNSLLLMKTLMAKYSY-QVTRYENGEEAMAFLMKSKheIDLVIWNFHMPDISGPDALNTIGKEM-DLPVVIMSHEQNKETVMKSIKNG 138
                     89*********************.***************666667**********************6644.7********************** PP

                     ESEEEESS--HH CS
    Response_reg  94 akdflsKpfdpe 105
                     a dfl+Kp+++e
  Csa08g044470.1 139 ACDFLVKPMSKE 150
                     ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.4E-2743168IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.2E-2843198No hitNo description
SMARTSM004484.0E-1644155IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.50145160IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.5E-1846150IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.36E-1647155No hitNo description
SuperFamilySSF466892.69E-13217281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-20217281IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-15219278IPR006447Myb domain, plants
PfamPF002494.9E-6221277IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSNILDENSH HLRKEVSACD DETEFPIINE DELDEDEEFA TTSIRVLLVD ADSNSLLLMK  60
TLMAKYSYQV TRYENGEEAM AFLMKSKHEI DLVIWNFHMP DISGPDALNT IGKEMDLPVV  120
IMSHEQNKET VMKSIKNGAC DFLVKPMSKE VVAVLWQHVF RKRMMSKSGL DQPGELGTVE  180
SDSDEFNDLK EDDIYRSNGE GSRNTSDQKE DKSXIFEKKP RMSWTAELHQ KFEAAVEKIS  240
RVGSTPYPKD ILKCMQEEMN VQGLTRNNVA SHLQKYRQSC NKKTCSPQEI GQEDFDWRNA  300
GQDPTFTASN PLLSSNVNLQ TTPPFSMTDQ GAPRTSHFMN DQAAVNNFIM ANHVSYIPQP  360
PQLHHSLNLP SMLPKQELGH VSSAIDNSDP LICHSSLPFG YGECFPHAGF NNNNNNPDPF  420
PPAGFNNNNI NNREPFPPPG FNYNFDSQIG GN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g044470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1626517e-54AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBankCP0026867e-54CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424559.20.0PREDICTED: putative two-component response regulator ARR20
SwissprotQ9LZJ81e-163ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLR0HLD90.0R0HLD9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010424559.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-134response regulator 20