PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g048540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 101aa    MW: 11380.3 Da    PI: 11.0143
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g048540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-311568255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prlrW++eLH++Fv+aveqLGG+++AtPk +l+lm+ kgL+++hvkSHLQ+YR+
  Csa08g048540.1 15 PRLRWNSELHNSFVQAVEQLGGENRATPKMVLQLMDAKGLSISHVKSHLQMYRS 68
                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8451171IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-291169IPR009057Homeodomain-like
SuperFamilySSF466892.15E-141368IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-231569IPR006447Myb domain, plants
PfamPF002492.9E-71667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MKNPIVRSYV RSKVPRLRWN SELHNSFVQA VEQLGGENRA TPKMVLQLMD AKGLSISHVK  60
SHLQMYRSMK LEESMQEILA KRSVKSDRTS NLVAISTVPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-191670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-191670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-191670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-191670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-191670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-191670357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-191670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-191670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-191670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-191670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-191670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-191670458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g048540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0740218e-41AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
GenBankAL1615018e-41AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.
GenBankCP0026878e-41CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455748.12e-55PREDICTED: myb family transcription factor PHL13-like isoform X2
SwissprotQ700D94e-27MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A1P8B8R62e-49A0A1P8B8R6_ARATH; Myb-like DNA-binding domain protein
STRINGXP_010455747.18e-53(Camelina sativa)
STRINGXP_010467966.11e-52(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.17e-32G2-like family protein