PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g049970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 558aa    MW: 64635.4 Da    PI: 8.0639
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g049970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-09348390146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el ++  +++G++ Wkt a  mg  + + ++k+ w+ 
   Csa08g049970.1 348 KGVWTKEDLELVKQFQAKHGND-WKTLADAMG--KHRVHVKDAWRR 390
                      799*******************.********9..778999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.3E-6274345IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-5277342IPR009057Homeodomain-like
PROSITE profilePS500904.089277342IPR017877Myb-like domain
PROSITE profilePS500906.284343391IPR017877Myb-like domain
SMARTSM007170.0017347394IPR001005SANT/Myb domain
SuperFamilySSF466892.85E-7347404IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-6350399IPR009057Homeodomain-like
PfamPF139217.9E-11351408No hitNo description
PROSITE profilePS500907.34392460IPR017877Myb-like domain
SMARTSM0071714396462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-6400461IPR009057Homeodomain-like
SuperFamilySSF466893.84E-6440518IPR009057Homeodomain-like
PROSITE profilePS500907.166462515IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MKKKKQNRET KDGREREKLG DDVVVKKKSK KQRIDSEAED DGKMKNKEIR VDSESEDGGK  60
KTKKKKNKKE SKGDVIGNSE SSKVDEGIEG DENPLDDDAD MNKMDLGAQE NTDNKMKRKS  120
KKKTKLSVDS EVEDDNLNST KQSVDSEVED NNLNSTKKAA KRKSKEKKQT VDSEAVETDL  180
SSSIDAKKKR KEKKKKKKKQ KQSEVSEAEE SNNHGKNAKK KRKRQESGES DKDVTTPSSK  240
SSKKVKFSDQ VEIFQSEDEE TDEEVEVEEV KLVRGKRFTK EEDELIKKAV YEYIDNHALG  300
DEGLKMVMDC KSHKQVKGCW KEIESALPWR PRFSVYHRAH NLFEEGSKGV WTKEDLELVK  360
QFQAKHGNDW KTLADAMGKH RVHVKDAWRR IRLNMNKGHW SREEYQSLYD LVNKDLRMKA  420
FQEKHSKHGM LRDNIPWMAI SDVLGTRDHV TCCNKWYDQL TSPMVVNGTW ANVDDYRLME  480
ELLKLDAACI DDVDWDYLLE NRDGEACRKR WNQMIRHIGI PTSKTFAEQV EILSGRYCPE  540
LAQDREDFDN RPYDPED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188195KRKEKKKK
2189197RKEKKKKKK
3192198KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g049970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422470.10.0PREDICTED: cyclin-D-binding Myb-like transcription factor 1
TrEMBLD7MJ000.0D7MJ00_ARALL; Uncharacterized protein
STRINGXP_010422470.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein