PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g052800.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 557aa MW: 61357.6 Da PI: 6.8183

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g052800.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	5e-31	304	363	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Csa08g052800.1 304 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 363 58*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.7E-33	289	365	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-28	297	365	IPR003657	WRKY domain
PROSITE profile	PS50811	28.908	299	365	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	304	364	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	305	363	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MVQAHKCNIL LVPTITVFSS LHIQKIFGNQ KVWPQISLKI IVEGTLSFFC YFLLSLHLCL 60 SISLFCLQME EHTQDRREIA FLHSGEFLLG DFDSKDHQPN ESSEEHRHKS SIKEVDFFSP 120 KSQPYDDDIG HVRTTTTIVG SSGFNDDLVM VNSCHGTSSD DGDDKTKTQI IRLKLELARL 180 HEENYKLKHL LDEISESYNN LQRRVLLVRQ TQVGGLHKQH EDTPQAGSSQ ALEDMNNEIA 240 ATTLKRRLLD DVDDRDMHQG RSPKTPRLDQ NKSNNPDEQQ NPHDQLPFRK ARVSVRARSD 300 ATTVNDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRCAEDTT ILTTTYEGNH 360 NHPLPPSATA MAATTSAAAA MLLSGSTTSN LHQTLSSPSA TSSSSFYNNF PYTSTIATLS 420 ASAPFPTITL DLTNPPRPLQ PPPQYLSQYG PAAFLPNANQ IRSINNNSNP QLLLPNLLGP 480 QALPRDMVDS VRAAIAMDPN FTAALAAAIS NIIGGGNNDN NNNDIINDNK VDAKSGGSSN 540 GDSPQLPQSC TTFSTN*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MVQAHKCNIL LVPTITVFSS LHIQKIFGNQ KVWPQISLKI IVEGTLSFFC YFLLSLHLCL  60
SISLFCLQME EHTQDRREIA FLHSGEFLLG DFDSKDHQPN ESSEEHRHKS SIKEVDFFSP  120
KSQPYDDDIG HVRTTTTIVG SSGFNDDLVM VNSCHGTSSD DGDDKTKTQI IRLKLELARL  180
HEENYKLKHL LDEISESYNN LQRRVLLVRQ TQVGGLHKQH EDTPQAGSSQ ALEDMNNEIA  240
ATTLKRRLLD DVDDRDMHQG RSPKTPRLDQ NKSNNPDEQQ NPHDQLPFRK ARVSVRARSD  300
ATTVNDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRCAEDTT ILTTTYEGNH  360
NHPLPPSATA MAATTSAAAA MLLSGSTTSN LHQTLSSPSA TSSSSFYNNF PYTSTIATLS  420
ASAPFPTITL DLTNPPRPLQ PPPQYLSQYG PAAFLPNANQ IRSINNNSNP QLLLPNLLGP  480
QALPRDMVDS VRAAIAMDPN FTAALAAAIS NIIGGGNNDN NNNDIINDNK VDAKSGGSSN  540
GDSPQLPQSC TTFSTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-22	291	366	1	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g052800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229522	0.0	AK229522.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL17-27-A10.
GenBank	BT008704	0.0	BT008704.1 Arabidopsis thaliana clone RAFL17-27-A10 (R50576) putative WRKY family transcription factor (At4g01720) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010422693.1	0.0	PREDICTED: probable WRKY transcription factor 47 isoform X2
Swissprot	Q9ZSI7	0.0	WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBL	Q0WNC3	0.0	Q0WNC3_ARATH; At4g01720
STRING	XP_010422691.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7156	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01720.1	0.0	WRKY family protein