PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g052800.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 530aa    MW: 58245.9 Da    PI: 6.8964
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g052800.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31277336159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Csa08g052800.2 277 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 336
                     58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-33262338IPR003657WRKY domain
SuperFamilySSF1182908.76E-28270338IPR003657WRKY domain
PROSITE profilePS5081128.908272338IPR003657WRKY domain
SMARTSM007741.6E-37277337IPR003657WRKY domain
PfamPF031061.7E-26278336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MVQAHKCNIL LVPTITVFSS LHIQKIFGNQ KVWPQISLKI IVEEHTQDRR EIAFLHSGEF  60
LLGDFDSKDH QPNESSEEHR HKSSIKEVDF FSPKSQPYDD DIGHVRTTTT IVGSSGFNDD  120
LVMVNSCHGT SSDDGDDKTK TQIIRLKLEL ARLHEENYKL KHLLDEISES YNNLQRRVLL  180
VRQTQVGGLH KQHEDTPQAG SSQALEDMNN EIAATTLKRR LLDDVDDRDM HQGRSPKTPR  240
LDQNKSNNPD EQQNPHDQLP FRKARVSVRA RSDATTVNDG CQWRKYGQKM AKGNPCPRAY  300
YRCTMAVGCP VRKQVQRCAE DTTILTTTYE GNHNHPLPPS ATAMAATTSA AAAMLLSGST  360
TSNLHQTLSS PSATSSSSFY NNFPYTSTIA TLSASAPFPT ITLDLTNPPR PLQPPPQYLS  420
QYGPAAFLPN ANQIRSINNN SNPQLLLPNL LGPQALPRDM VDSVRAAIAM DPNFTAALAA  480
AISNIIGGGN NDNNNNDIIN DNKVDAKSGG SSNGDSPQLP QSCTTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22264339175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g052800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4801650.0AF480165.1 Arabidopsis thaliana WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
GenBankAK2295220.0AK229522.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL17-27-A10.
GenBankBT0087040.0BT008704.1 Arabidopsis thaliana clone RAFL17-27-A10 (R50576) putative WRKY family transcription factor (At4g01720) mRNA, complete cds.
GenBankBT0290240.0BT029024.1 Arabidopsis thaliana At4g01720 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422691.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLQ0WNC30.0Q0WNC3_ARATH; At4g01720
STRINGXP_010422691.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein