PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g055230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CAMTA
Protein Properties Length: 1021aa    MW: 114756 Da    PI: 5.7513
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g055230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1184.79.8e-58121292118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwl++ ei++iL+n++k+++++e++ rp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+v+vl+cyYah+e n++fq
  Csa08g055230.1  12 MSEaRHRWLRPAEICEILQNHHKFHIASESPPRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSVDVLHCYYAHGEGNENFQ 106
                     45559****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rrcyw+Le++l +iv+vhylevk
  Csa08g055230.1 107 RRCYWMLEQDLMHIVFVHYLEVK 129
                     ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.6518134IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-8411129IPR005559CG-1 DNA-binding domain
PfamPF038598.6E-5114128IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.64E-14425511IPR014756Immunoglobulin E-set
PfamPF018332.1E-4425500IPR002909IPT domain
Gene3DG3DSA:2.60.40.105.0E-4426500IPR013783Immunoglobulin-like fold
PfamPF127962.2E-7609686IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.227609720IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.4E-18610721IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.04E-19610720IPR020683Ankyrin repeat-containing domain
CDDcd002045.49E-14615718No hitNo description
PROSITE profilePS5008811.22659691IPR002110Ankyrin repeat
SMARTSM002480.0029659688IPR002110Ankyrin repeat
SuperFamilySSF525409.56E-8833884IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.51834856IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657835864IPR000048IQ motif, EF-hand binding site
PfamPF006120.0024837855IPR000048IQ motif, EF-hand binding site
SMARTSM000150.047857879IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.359858882IPR000048IQ motif, EF-hand binding site
PfamPF006120.003860879IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MHITRIDMEQ LMSEARHRWL RPAEICEILQ NHHKFHIASE SPPRPASGSL FLFDRKVLRY  60
FRKDGHNWRK KKDGKTIKEA HEKLKVGSVD VLHCYYAHGE GNENFQRRCY WMLEQDLMHI  120
VFVHYLEVKG NRTSQGMKEN NSNSVNGTSS VNIDSTASPT STLSSLCEDA DSGDSHQARS  180
VLRASPESQT GNCYGWTPPT SMHNVSQVHG NRVRESDSQR SVDVRAWDAV GNSLTRYHDP  240
PYCNNLLTQM QPSITDSMLV DENTDKGGRL KSEPIRNPLQ MQSNWQIPVQ DDLLLPKGQE  300
DLFSHSGMTD DIDLALFELS AEDNFETFAS LLGSENQQPF GNSYQAPPSS MESEYIPVKK  360
SLLRSEDSLK KVDSFSRWAI KELAEMEDLQ MQSSREDIAW TTVECETAAA GISLSPSLSE  420
DQRFTIVDFW PKCAETDAEV EVMVIGTFLL SPQEVTKYNW SCMFGEVEVP AEILVDGVLC  480
CHAPPHTAGH VPFYVTCSNR FACSEVREFD FLSGSTQKID AADVHGPSTD EAASLQLRFE  540
KLLAHRAFVN EYHIFEDVGE KRGKISKIML LKEEKEYLLP GTYQRDSTKQ EPKGQLFREQ  600
LEEKLYIWLI HKVSEEGKGP NMLDEDGQGI LHFIAALGYD WAIKPMLAAG VNINFRDANG  660
WSALHWAAFS GREETVAVLV SLGADAGALT DPSPELPLGK TAADLAYANG HRGISGFLAE  720
SSLTSYLEKL TVDSKENSSA NSFGEKAVQT VSERSAAPMS YGDLPEKLSL KDSLTAVRNA  780
TQAADRLHQV FRMQSFERKQ LSEFVDDDKI DISDELAVSF AASKTKTPGH SDVSLSSAAT  840
HIQKKYRGWK KRKEFLLIRQ RIVRIQAHVR GHQVRKQYRT VIWSVGLLEK IILRWRRKGK  900
GLRGFKSSAI AKPVEPEPTA SAVSPTIPQE DEYDFLKEGR KQTEERLQKA LTRVKSMVQY  960
PEARDQYRRL LTVVEGFREN EASSSASINN EVGPVNCDED DLIDIDSLLN DDTLMMSFSP  1020
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g055230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287400.0AK228740.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 1, complete cds, clone: RAFL16-07-H14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084442.10.0PREDICTED: calmodulin-binding transcription activator 1 isoform X2
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLR0FCP00.0R0FCP0_9BRAS; Uncharacterized protein
STRINGXP_010422986.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein