PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g056710.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 148aa MW: 17264.6 Da PI: 9.6372

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g056710.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	184.7	2.2e-57	17	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv + +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ Csa08g056710.1 17 LPPGFRFHPTDEELITHYLHNKVLDMAFSA-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIYR- 109 79************************99.88***********99999*************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkg kt+Wvmheyrl Csa08g056710.1 110 GKSLVGMKKTLVFYRGRAPKGLKTNWVMHEYRL 142 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-61	13	145	IPR003441	NAC domain
PROSITE profile	PS51005	54.831	17	147	IPR003441	NAC domain
Pfam	PF02365	1.6E-30	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MEAFGGFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHNKVL DMAFSAKAIG EVDLNKAEPW 60 ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYRGRAPKG LKTNWVMHEY RLDGKXF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	14	142	14	142	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	14	142	14	142	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	14	142	14	142	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	14	142	14	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	14	142	17	145	NAC domain-containing protein 19
3swm_B	2e-53	14	142	17	145	NAC domain-containing protein 19
3swm_C	2e-53	14	142	17	145	NAC domain-containing protein 19
3swm_D	2e-53	14	142	17	145	NAC domain-containing protein 19
3swp_A	2e-53	14	142	17	145	NAC domain-containing protein 19
3swp_B	2e-53	14	142	17	145	NAC domain-containing protein 19
3swp_C	2e-53	14	142	17	145	NAC domain-containing protein 19
3swp_D	2e-53	14	142	17	145	NAC domain-containing protein 19
4dul_A	2e-53	14	142	14	142	NAC domain-containing protein 19
4dul_B	2e-53	14	142	14	142	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g056710.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228027	0.0	AK228027.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-54-D06.
GenBank	BT006419	0.0	BT006419.1 Arabidopsis thaliana At5g07680 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010423179.1	1e-106	PREDICTED: NAC domain-containing protein 79
Swissprot	Q9FLR3	1e-101	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	R0HBK3	1e-100	R0HBK3_9BRAS; Uncharacterized protein
STRING	XP_010423179.1	1e-106	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-103	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]