PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g057340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 215aa    MW: 23514.1 Da    PI: 7.8264
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g057340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.71.5e-10130148220
                     --SS-EEEEEEE--TT-SS CS
            WRKY   2 dDgynWrKYGqKevkgsef 20 
                     dDgynWrKYGqK+vkgs++
  Csa08g057340.1 130 DDGYNWRKYGQKQVKGSHN 148
                     8***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-8120148IPR003657WRKY domain
PROSITE profilePS508119.752124148IPR003657WRKY domain
SuperFamilySSF1182901.96E-7125148IPR003657WRKY domain
SMARTSM007748.5E-4129170IPR003657WRKY domain
PfamPF031061.5E-6130148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGSFDRQRVV PKFKSATPSP LPLSPSPFFT LPNGVSPADL LDSPILFTSS NILPSPTTGT  60
FPAQSLNWKN NGLVIDQNDI KYEDGKNQLD FSFANKNTAP PLFLPSMVTQ PLPQLDVSKS  120
ESLSSNKTSD DGYNWRKYGQ KQVKGSHNHP KPPQSTKKSA STGVAAAHQS SSHDTGEDEA  180
DAKRWKREEN VKEPRLVVQT TSDIDILEDG YRSN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g057340.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2246992e-43AF224699.1 Arabidopsis thaliana WRKY DNA-binding protein 26 (WRKY26) mRNA, complete cds.
GenBankAK1175452e-43AK117545.1 Arabidopsis thaliana At5g07100 mRNA for SPF1 like protein, complete cds, clone: RAFL17-19-L10.
GenBankAY0846922e-43AY084692.1 Arabidopsis thaliana clone 115195 mRNA, complete sequence.
GenBankBT0263492e-43BT026349.1 Arabidopsis thaliana At5g07100 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423253.11e-156PREDICTED: probable WRKY transcription factor 26
SwissprotQ9C5T35e-98WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLD7LZX61e-106D7LZX6_ARALL; WRKY DNA-binding protein 26
STRINGXP_010423253.11e-155(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152911518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.12e-88WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]