PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g057630.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 506aa MW: 56171.3 Da PI: 7.1835

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g057630.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.4e-10	164	201	5	39
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 k rr+++NReAAr+sR+RKka++++Le k +Le Csa08g057630.1 164 KTLRRLAQNREAARKSRLRKKAYVQQLEScriKLTQLE 201 7789***********************96322444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.2E-7	160	225	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.6E-7	161	208	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	162	206	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.41E-6	165	208	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.6E-6	166	194	No hit	No description
PROSITE pattern	PS00036	0	167	182	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-30	299	373	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MQGHHQNHHQ QHLSSASATS SASHGNFMNK DGYDIGEIDP SLFLYLDGQG HHDPSSTSPS 60 PLSHHHHTTQ NLAMRPPTST LNIFPSQPMH IEPPPSSTPN TDNARLVPAA QPSGSLRPSS 120 EPSMDLTNHS QFQPPQASKS IKKEGNRKGP ASSDHDIPKS SDPKTLRRLA QNREAARKSR 180 LRKKAYVQQL ESCRIKLTQL EQEIQRARSQ EINIKVDYQL ALATSAPAYV QQLESCRIKL 240 TQLEQEIQRA RSQGVFFGGS LIGDQHQGGL PIGPGNVSSE AAVFDMEYAR WLEEQQRLLT 300 ELRVATQEHL AENELRMFVD ACLAHYDHLI NLKAMVAKTD VFHLISGAWK TPAERCFLWM 360 GGFRPSEIIK VIVNQIEPLT EQQIVGICGL QQSTQEAEEA LSQGLEALNQ SLSDSIVSDS 420 LPPASAPLPP HLSNFMSHMS LALNKLSALE GFVLQADNLR HQTIHRLNQL LTTRQEARCL 480 LAVAEYFHRL QALSSLWLAR PRQDG*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MQGHHQNHHQ QHLSSASATS SASHGNFMNK DGYDIGEIDP SLFLYLDGQG HHDPSSTSPS  60
PLSHHHHTTQ NLAMRPPTST LNIFPSQPMH IEPPPSSTPN TDNARLVPAA QPSGSLRPSS  120
EPSMDLTNHS QFQPPQASKS IKKEGNRKGP ASSDHDIPKS SDPKTLRRLA QNREAARKSR  180
LRKKAYVQQL ESCRIKLTQL EQEIQRARSQ EINIKVDYQL ALATSAPAYV QQLESCRIKL  240
TQLEQEIQRA RSQGVFFGGS LIGDQHQGGL PIGPGNVSSE AAVFDMEYAR WLEEQQRLLT  300
ELRVATQEHL AENELRMFVD ACLAHYDHLI NLKAMVAKTD VFHLISGAWK TPAERCFLWM  360
GGFRPSEIIK VIVNQIEPLT EQQIVGICGL QQSTQEAEEA LSQGLEALNQ SLSDSIVSDS  420
LPPASAPLPP HLSNFMSHMS LALNKLSALE GFVLQADNLR HQTIHRLNQL LTTRQEARCL  480
LAVAEYFHRL QALSSLWLAR PRQDG*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g057630.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ132742	0.0	HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023637542.1	0.0	transcription factor TGA10 isoform X5
Swissprot	E3VNM4	0.0	TGA10_ARATH; Transcription factor TGA10
TrEMBL	A0A1J3I3I6	0.0	A0A1J3I3I6_NOCCA; Transcription factor HBP-1b(C1)
STRING	Cagra.8005s0020.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	0.0	bZIP family protein

Publications ? help Back to Top
Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]