PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g057630.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 463aa MW: 51241.7 Da PI: 7.1887

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g057630.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	164	192	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le Csa08g057630.2 164 KTLRRLAQNREAARKSRLRKKAYVQQLES 192 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-9	155	208	No hit	No description
SMART	SM00338	4.2E-8	160	224	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	162	206	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.54E-22	164	216	No hit	No description
SuperFamily	SSF57959	2.01E-7	164	205	No hit	No description
Pfam	PF00170	9.7E-8	164	194	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	167	182	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-30	256	330	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MQGHHQNHHQ QHLSSASATS SASHGNFMNK DGYDIGEIDP SLFLYLDGQG HHDPSSTSPS 60 PLSHHHHTTQ NLAMRPPTST LNIFPSQPMH IEPPPSSTPN TDNARLVPAA QPSGSLRPSS 120 EPSMDLTNHS QFQPPQASKS IKKEGNRKGP ASSDHDIPKS SDPKTLRRLA QNREAARKSR 180 LRKKAYVQQL ESCRIKLTQL EQEIQRARSQ GVFFGGSLIG DQHQGGLPIG PGNVSSEAAV 240 FDMEYARWLE EQQRLLTELR VATQEHLAEN ELRMFVDACL AHYDHLINLK AMVAKTDVFH 300 LISGAWKTPA ERCFLWMGGF RPSEIIKVIV NQIEPLTEQQ IVGICGLQQS TQEAEEALSQ 360 GLEALNQSLS DSIVSDSLPP ASAPLPPHLS NFMSHMSLAL NKLSALEGFV LQADNLRHQT 420 IHRLNQLLTT RQEARCLLAV AEYFHRLQAL SSLWLARPRQ DG*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MQGHHQNHHQ QHLSSASATS SASHGNFMNK DGYDIGEIDP SLFLYLDGQG HHDPSSTSPS  60
PLSHHHHTTQ NLAMRPPTST LNIFPSQPMH IEPPPSSTPN TDNARLVPAA QPSGSLRPSS  120
EPSMDLTNHS QFQPPQASKS IKKEGNRKGP ASSDHDIPKS SDPKTLRRLA QNREAARKSR  180
LRKKAYVQQL ESCRIKLTQL EQEIQRARSQ GVFFGGSLIG DQHQGGLPIG PGNVSSEAAV  240
FDMEYARWLE EQQRLLTELR VATQEHLAEN ELRMFVDACL AHYDHLINLK AMVAKTDVFH  300
LISGAWKTPA ERCFLWMGGF RPSEIIKVIV NQIEPLTEQQ IVGICGLQQS TQEAEEALSQ  360
GLEALNQSLS DSIVSDSLPP ASAPLPPHLS NFMSHMSLAL NKLSALEGFV LQADNLRHQT  420
IHRLNQLLTT RQEARCLLAV AEYFHRLQAL SSLWLARPRQ DG*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g057630.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ132742	0.0	HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010423290.1	0.0	PREDICTED: transcription factor TGA2.2-like isoform X1
Swissprot	E3VNM4	0.0	TGA10_ARATH; Transcription factor TGA10
TrEMBL	A0A1J3I3I6	0.0	A0A1J3I3I6_NOCCA; Transcription factor HBP-1b(C1)
STRING	Cagra.8005s0020.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	0.0	bZIP family protein

Publications ? help Back to Top
Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]