PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g057700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 215aa    MW: 22526.5 Da    PI: 8.7444
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g057700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.31.1e-12180205127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykt++C++f++ G C yGdrC+FaHg+
  Csa08g057700.1 180 YKTKICDRFLK-GNCTYGDRCHFAHGE 205
                     9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.723537IPR000571Zinc finger, CCCH-type
SMARTSM00356151336IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.05E-1385157IPR004088K Homology domain, type 1
SMARTSM003225.2E-1086156IPR004087K Homology domain
PROSITE profilePS5008413.43987151IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-1488155IPR004088K Homology domain, type 1
PfamPF000132.4E-989152IPR004088K Homology domain, type 1
CDDcd001052.54E-1189151No hitNo description
Gene3DG3DSA:4.10.1000.102.0E-16174209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.3179206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-9179209IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-9179205IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10180205IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSLFSFSDEI ADAYYAFCCS TSGCPFGDNC HFLHYVPGGY NAAAQMTTLR PSVAQVSRNM  60
QGSGGAGGRF SGRGDPGLGP VSVFGASATA KISVDASLAG AIIGKSGIHS KQICRQTGAK  120
LSIKDHERDP NLKIIELDGT FEQINVASGM VRELIGRLGS VKKPQGIGGS EGKPHPGSSY  180
KTKICDRFLK GNCTYGDRCH FAHGEAELRR SGMA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g057700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020320.0AP002032.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPH15.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423303.11e-141PREDICTED: zinc finger CCCH domain-containing protein 52 isoform X1
SwissprotQ9FG301e-129C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLA0A1P8BFL71e-129A0A1P8BFL7_ARATH; KH domain-containing protein / zinc finger (CCCH type) family protein
TrEMBLA0A384LAX41e-129A0A384LAX4_ARATH; Uncharacterized protein
STRINGXP_010423303.11e-141(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-118C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]