PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g057970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28030.8 Da    PI: 4.58
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g057970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.61.5e-131247540
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    n++ r  ++ kR++ +lKK +ELS+LCd+++++++f
  Csa08g057970.1 12 NERARRLSLEKRLASLLKKTKELSILCDMQACLVVF 47
                    88999******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-5159IPR002100Transcription factor, MADS-box
CDDcd002661.07E-17284No hitNo description
SuperFamilySSF554552.62E-15993IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.7321247IPR002100Transcription factor, MADS-box
PfamPF003191.4E-111248IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGKRKTPTTW ANERARRLSL EKRLASLLKK TKELSILCDM QACLVVFDRE VDQLVVWPAP  60
QTAKSLFDKF YSLTDHERNL KAVDPESFIQ TNIQKLEKKI ADTRKAITEF QMEDLMLELA  120
LGRQLADLSP TEVDKLLSYT GKKIMCLRKE MGSAEQLDMS VDEASLGDAT LRASNVPSAG  180
WGGNVMETGS MYYFDQWVST DPEVQEPSDE THLPTMVTGM DPNMEPAVGD KNLGGTSKGE  240
SSKAAGGAED DAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g057970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423334.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLQ9FG202e-92Q9FG20_ARATH; AGAMOUS-like 96
STRINGXP_010423334.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.13e-97AGAMOUS-like 96