PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g058430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 654aa    MW: 74923.4 Da    PI: 8.659
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g058430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07474515240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE + l ++ +++++g   +W+ I++++g+gR+ +++
   Csa08g058430.1 474 KPWSKEEIDMLRKGTTKFPKGtsqRWEVISEYIGTGRSVEEI 515
                      69***********************************99876 PP
2Myb_DNA-binding26.12e-08597640445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W+   +  lv+a k ++++   +W+++a  ++ g+t +qck ++ 
   Csa08g058430.1 597 WSDVQERALVQALKTFPKEtnqRWERVATAVP-GKTMNQCKKKFA 640
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.79E-1985178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.3E-1996199IPR001623DnaJ domain
SMARTSM002714.8E-1399174IPR001623DnaJ domain
PROSITE profilePS5007617.269100182IPR001623DnaJ domain
CDDcd062571.16E-12100171IPR001623DnaJ domain
PfamPF002269.7E-17100179IPR001623DnaJ domain
PRINTSPR006253.2E-7105123IPR001623DnaJ domain
PRINTSPR006253.2E-7123138IPR001623DnaJ domain
PRINTSPR006253.2E-7154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.935468523IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-4469515IPR009057Homeodomain-like
SMARTSM007176.3E-5472525IPR001005SANT/Myb domain
SuperFamilySSF466896.95E-7474517IPR009057Homeodomain-like
CDDcd001670.00243475515No hitNo description
SMARTSM007171.2E-8593645IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-9596649IPR009057Homeodomain-like
PROSITE profilePS500907.236597643IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-5597642IPR009057Homeodomain-like
CDDcd001671.10E-5597643No hitNo description
PfamPF002496.6E-7597641IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MQSWGINSAI KLLTYSSELS DGKALYVSSN CHPVKALNRE PAGHAFHSAA LKLRGCAKEA  60
TGKNEDTDKK VPKEKDSEYI PSYDSHSNKG KKKSGKQQHD HYALLGLGNL RYLATEDQIR  120
KSYREAALKH HPDKLAPLLL AEETEEAKQA KKDEIESHFK LIQEAYEILM DSTKRRIFDS  180
TDEFDDEVPS DCAPKDFFKV FGPAFKRNAR WSTNPRVPDL GDENTPLKEV DSFYSWWYSF  240
KSWREFPEEE EHDIEQAESR EEKRWMEREN TKKSQKARKE EHARIRVLVD NAYKKDTRIL  300
KRKEEEKAMK LQKKEEKVMA KRKLEEEAAA AIEEERRRKE EEAKRAAEAA QLHKRTKEKE  360
KKLLRKERSR LRTLSAPVLS ERLLGISVEH VEDLCMSLNT EQLRKLCDKM ENKEGLALAK  420
VIKNGDRSDD DEAESNEEEV VVAVKQNGHI EAKVETNGHV EAKVDTATHQ KKEKPWSKEE  480
IDMLRKGTTK FPKGTSQRWE VISEYIGTGR SVEEILKATK TVLLQKPDSA KAFDSFLENR  540
KPAASIASPL STREELGEPI IATKPHEEDN STKTETTKQN SKGEENNNSK PADPEGWSDV  600
QERALVQALK TFPKETNQRW ERVATAVPGK TMNQCKKKFA ELKDIIRTKK PTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1419629920123Zuotin
5dje_B2e-1419629920123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320338KRKLEEEAAAAIEEERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g058430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423388.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLR0FE250.0R0FE25_9BRAS; Uncharacterized protein
STRINGXP_010423388.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain