PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g058460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 183aa    MW: 20724.1 Da    PI: 5.7488
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g058460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.77.2e-3771071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC++dCv++pyf  e+ +++fa+vhk+FGasnv+k l +lp ++r+ a+ ++ yeA  r+rdPvyG+v++i++l+qq+ +l++e+
  Csa08g058460.1   7 SCGACKFLRRKCNRDCVFSPYFSYEEaSSHFAAVHKVFGASNVSKHLLQLPVHQRNVAAITIPYEALSRMRDPVYGCVAHIFALHQQVVTLQEEI 101
                     6*********************998868******************************************************************* PP

          DUF260  95 allkee 100
                     + l+++
  Csa08g058460.1 102 EFLGSQ 107
                     998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3096108IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-357103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAGHGSSCGA CKFLRRKCNR DCVFSPYFSY EEASSHFAAV HKVFGASNVS KHLLQLPVHQ  60
RNVAAITIPY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE IEFLGSQMTN FSYSNQNGSQ  120
LNNIPEFVNQ MTMDTTSFVD ESLLNYNEEG RNCLDGFFTN SEETLVNHTW LQDMDYYYAP  180
HN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3431327130LOB family transfactor Ramosa2.1
5ly0_B2e-3431327130LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g058460.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738570.0AB473857.1 Arabidopsis thaliana ASL24 mRNA for ASYMMETRIC LEAVES2-like 24 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423390.11e-137PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS81e-119LBD33_ARATH; LOB domain-containing protein 33
TrEMBLD7LZ361e-119D7LZ36_ARALL; Predicted protein
STRINGXP_010423390.11e-136(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-122LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]