PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g058940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 251aa    MW: 28665.3 Da    PI: 7.6271
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g058940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.62.9e-1226108286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++ + +L+ea  ++  +l  g+l++++W++v++++     +    ++ +qCk++++ l+k+yk +k+  +       st+++fd+l+
  Csa08g058940.1  26 WSEEATATLVEAWGNRYVKLHHGNLRQNDWKDVADAVnsrhGDNARAKTDVQCKNRIDTLKKKYKTEKAKLSP------STWRFFDRLD 108
                     *************************************86444444567999*****************99986......68*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2324109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
METTTTTPQS KSSGSHRPPL GREDWWSEEA TATLVEAWGN RYVKLHHGNL RQNDWKDVAD  60
AVNSRHGDNA RAKTDVQCKN RIDTLKKKYK TEKAKLSPST WRFFDRLDFL IGPVVKKSTR  120
GGGVVKSVVP FVNPNHLNPA GSESSLDDDD DDNESGDWEF VARKQPRVEE VDLSEEGSTC  180
RELASAILRF GEVYERIEGK KQQMMIELEK QRMEVTKEVE LKRLNMLMEM QLEIEKSKQR  240
KRRVGSGMEL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g058940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423458.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLR0FGL51e-137R0FGL5_9BRAS; Uncharacterized protein
STRINGXP_010423458.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-136sequence-specific DNA binding transcription factors